View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19301_low_9 (Length: 447)
Name: NF19301_low_9
Description: NF19301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19301_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 17 - 432
Target Start/End: Original strand, 23121142 - 23121556
Alignment:
| Q |
17 |
gaacacatcaattaaaggaagcacatgacctgacgatgaatattatttctacacacaataaattagcataacaatcccaattattttactttcaaaaatg |
116 |
Q |
| |
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|||||||||||||||||| |||||||||| ||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |
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| T |
23121142 |
gaacacatcaattaaagggagcacatgacatgacgatgaatattatttctacacataaaaaattagcataacaatcccaattattttactttcaaaaatg |
23121241 |
T |
|
| Q |
117 |
tgataaaatttagttttgcctaatgactacaattattttcctcacgaatggttgacatcccctctcttttttccccatagaaaaagcgctaatcatagag |
216 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| |||||||||||| |
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| T |
23121242 |
tgataaaatttggttttgcctaatgactacaattattttcctcacgaatggttaacatcccctctctttttttcccatagaaaaagcactaatcatagag |
23121341 |
T |
|
| Q |
217 |
aaaccagttctgttacactctgacattaacttagaagttaagcaattatagcttcttnnnnnnnnnnngaacttagaaggcaagcatgtgctattcccct |
316 |
Q |
| |
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||||||||| ||||||||||| ||||||||||||||||||| ||||||||||||||| | |||||| || |||||||||||||||| || |
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| T |
23121342 |
aaaccagttgtgttacactcttacattaacttagaagttaaccaattatagcttcttaaaataaaaaa-accttagagggtaagcatgtgctattcctct |
23121440 |
T |
|
| Q |
317 |
ttcactctcccaattttctggatgatgcaaatgtgtattctataacctcaattttacacaaaatccaacaatcatcatgcctaaatttgtaatgttaatc |
416 |
Q |
| |
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|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
23121441 |
ttcactctcccaatttcctcgatgatgcaaatgtgtattctataacctcaattttacacaaaatccaacaatcatcatgcctagatttgtaatgttaatc |
23121540 |
T |
|
| Q |
417 |
ttttgatgtaagacat |
432 |
Q |
| |
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|||||| ||||||||| |
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| T |
23121541 |
ttttgacgtaagacat |
23121556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 167; Significance: 3e-89; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 17 - 261
Target Start/End: Complemental strand, 22631385 - 22631139
Alignment:
| Q |
17 |
gaacacatcaattaaaggaagcacatgacctgacgatgaatattatttctacacacaataaattagcataacaatcccaattattt-tactt-tcaaaaa |
114 |
Q |
| |
|
|||||||||||||||||| |||||||||| |||| ||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |||| | |
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|
| T |
22631385 |
gaacacatcaattaaagggagcacatgacatgacaccgaatattatttctacacacaaaaaattagcataacaatcccaattatttctacacatcaatat |
22631286 |
T |
|
| Q |
115 |
tgtgataaaatttagttttgcctaatgactacaattattttcctcacgaatggttgacatcccctctcttttttccccatagaaaaagcgctaatcatag |
214 |
Q |
| |
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||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
22631285 |
tgtgataaaatttgattttgcctaatgactacaattattttcctcatgaatggttgacatcccctctctttttttcccatagaaaaagcgctaatcatag |
22631186 |
T |
|
| Q |
215 |
agaaaccagttctgttacactctgacattaacttagaagttaagcaa |
261 |
Q |
| |
|
||||||||||| | ||||||||||||||||||||||||||||||||| |
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|
| T |
22631185 |
agaaaccagttattttacactctgacattaacttagaagttaagcaa |
22631139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 302 - 432
Target Start/End: Complemental strand, 22631138 - 22631008
Alignment:
| Q |
302 |
atgtgctattcccctttcactctcccaattttctggatgatgcaaatgtgtattctataacctcaattttacacaaaatccaacaatcatcatgcctaaa |
401 |
Q |
| |
|
|||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
22631138 |
atgtgctattcctctttcactctcccaatttcctggatgatgcaaatgtgtattctataacctcaattttacacaaaatccaacaatcatcatgcctaga |
22631039 |
T |
|
| Q |
402 |
tttgtaatgttaatcttttgatgtaagacat |
432 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
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|
| T |
22631038 |
tttgtaatgttaatcttttgatgtaagacat |
22631008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 92; Significance: 2e-44; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 53 - 259
Target Start/End: Complemental strand, 27366555 - 27366351
Alignment:
| Q |
53 |
tgaatattatttctacacacaataaattagcataacaatcccaattattttactttcaaaaatgtgataaaatttagttttgcctaatgactacaattat |
152 |
Q |
| |
|
||||||||||||| ||| ||| || || ||||||||||||| ||||||||||||| ||||||||||||||||| ||||||| ||||| |||| |||| |
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|
| T |
27366555 |
tgaatattatttc--cacgcaaaaatttggcataacaatccctattattttactttgtaaaatgtgataaaatttggttttgcgtaatgtctaccattac |
27366458 |
T |
|
| Q |
153 |
tttcctcacgaatggttgacatcccctctcttttttccccatagaaaaagcgctaatcatagagaaaccagttctgttacactctgacattaacttagaa |
252 |
Q |
| |
|
|||||||| |||||||||||||||||| |||||||| | | || |||| ||||||||||||||||||| || |||||||| |||||||||||| ||| |
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|
| T |
27366457 |
tttcctcatgaatggttgacatcccctgtctttttttctctaagtaaaaatgctaatcatagagaaaccaattttgttacaccttgacattaacttcgaa |
27366358 |
T |
|
| Q |
253 |
gttaagc |
259 |
Q |
| |
|
||||||| |
|
|
| T |
27366357 |
gttaagc |
27366351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 53 - 259
Target Start/End: Complemental strand, 27456902 - 27456698
Alignment:
| Q |
53 |
tgaatattatttctacacacaataaattagcataacaatcccaattattttactttcaaaaatgtgataaaatttagttttgcctaatgactacaattat |
152 |
Q |
| |
|
||||||||||||| ||| ||| || || ||||||||||||| ||||||||||||| ||||||||||||||||| ||||||| ||||| |||| |||| |
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|
| T |
27456902 |
tgaatattatttc--cacgcaaaaatttggcataacaatccctattattttactttgtaaaatgtgataaaatttggttttgcgtaatgtctaccattac |
27456805 |
T |
|
| Q |
153 |
tttcctcacgaatggttgacatcccctctcttttttccccatagaaaaagcgctaatcatagagaaaccagttctgttacactctgacattaacttagaa |
252 |
Q |
| |
|
|||||||| |||||||||||||||||| |||||||| | | || |||| ||||||||||||||||||| || |||||||| |||||||||||| ||| |
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|
| T |
27456804 |
tttcctcatgaatggttgacatcccctgtctttttttctctaagtaaaaatgctaatcatagagaaaccaattttgttacaccttgacattaacttcgaa |
27456705 |
T |
|
| Q |
253 |
gttaagc |
259 |
Q |
| |
|
||||||| |
|
|
| T |
27456704 |
gttaagc |
27456698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 53 - 188
Target Start/End: Original strand, 45074489 - 45074622
Alignment:
| Q |
53 |
tgaatattatttctacacacaataaattagcataacaatcccaattattttactttcaaaaatgtgataaaatttagttttgcctaatgactacaattat |
152 |
Q |
| |
|
||||||||||||| ||| ||| || || ||||||||||||| ||||||||||||| ||||||||||||||||| ||||||| ||||| |||||||| |
|
|
| T |
45074489 |
tgaatattatttc--cacgcaaaaatttggcataacaatccctattattttactttgtaaaatgtgataaaatttggttttgcgtaatgcttacaattac |
45074586 |
T |
|
| Q |
153 |
tttcctcacgaatggttgacatcccctctctttttt |
188 |
Q |
| |
|
|||||||| |||||||||||||||||| | |||||| |
|
|
| T |
45074587 |
tttcctcatgaatggttgacatcccctttttttttt |
45074622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 52 - 188
Target Start/End: Complemental strand, 51094022 - 51093886
Alignment:
| Q |
52 |
atgaatattatttctacacacaataaattagcataacaatcccaattattttactttcaaaaatgtgataaaatttagttttgcctaatgactacaatta |
151 |
Q |
| |
|
||||||||| ||| | |||||| | ||| ||||| |||| |||||||||| | ||| ||||||||||||| |||| || | |||||||||||| | | |
|
|
| T |
51094022 |
atgaatattttttatttacacaacatattggcatatcaattccaattatttaattttgaaaaatgtgataatatttggtgtatcctaatgactaccgtaa |
51093923 |
T |
|
| Q |
152 |
ttttcctcacgaatggttgacatcccctctctttttt |
188 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||| |
|
|
| T |
51093922 |
ctttcctcatgaatggttgacatcccctctctttttt |
51093886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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