View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19302_high_3 (Length: 441)
Name: NF19302_high_3
Description: NF19302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19302_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 401; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 20 - 428
Target Start/End: Complemental strand, 48229015 - 48228607
Alignment:
| Q |
20 |
catgctagggtaacctaagctccccctatggatgctacgagcattgtgtttatttgttcaagaatattatgcatctcattatgactaaacaccttactaa |
119 |
Q |
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| T |
48229015 |
catgctagggtaacctaagctccccctatggatgctacgagcattgtgtttgtttgttcaagaatattatgcatctcattatgactaaacaccttactaa |
48228916 |
T |
|
| Q |
120 |
aggaagattggaagcgtgtttatgtttttgacaataagattgaaagagtgctaaaattaagcacgcgacttattgaattatgggatggcacaagtggccg |
219 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48228915 |
aggaagattggaagggtgtttatgtttttgacaataagattgaaagagtgctaaaattaagcacgcgacttattgaattatgggatggcacaagtggccg |
48228816 |
T |
|
| Q |
220 |
tgataaatattgtggttcgttgcttcaccaagaaagaatacaagtagatagatttgtggtccatcttccctctcatcacattcacatgtcatgccttgga |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48228815 |
tgataaatattgtggttcgttgcttcaccaagaaagaatacaagtagatagatttgtggtccatcttccctctcatcacattcacatgtcatgccttgga |
48228716 |
T |
|
| Q |
320 |
attttttcctctaaaggagacataggaatgagaggattggctaaaaataattggttattggagagcaaaagcaactccattaatcattataattgaataa |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48228715 |
attttttcctctaaaggagacataggaatgagaggattggctaaaaataattggttattggagagcaaaagcaactccattaatcattataattgaataa |
48228616 |
T |
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| Q |
420 |
ttctaagaa |
428 |
Q |
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| T |
48228615 |
ttctaagaa |
48228607 |
T |
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