View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19302_low_1 (Length: 641)
Name: NF19302_low_1
Description: NF19302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19302_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 587; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 587; E-Value: 0
Query Start/End: Original strand, 20 - 630
Target Start/End: Original strand, 43756309 - 43756919
Alignment:
| Q |
20 |
aacaggaccctgcagatgatcaaaggctgtgtgttttcttgattgagaaggcattgagtaagcttcccactggggaagagcaaatacttgcaatatttga |
119 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43756309 |
aacaggaccctgcagatgatcaaaggctgtgtgttttcttgattgagaaggcattgagtaagcttcccactggggaagagcaaatacttgcaatatttga |
43756408 |
T |
|
| Q |
120 |
tctgagaggttttggtccagaaaatgctgattttaaattcttggcattcttggtaatgttttttctactatctgtcaaatatttttagttgaaaaatatg |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43756409 |
tctgagaggttttggtccagaaaatgctgattttaaattcttggcattcttggtaatgttttttctactatctgtcaaatatttttagttgaaaaatatg |
43756508 |
T |
|
| Q |
220 |
cagtttcatccccgatattgcttgaaataaaagctcaaaagcatcataaaataaaatctaatatttctttatttttggcagtttaatgtattctacaatt |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43756509 |
cagtttcatccccgatattgcttgaaataaaagttcaaaagcatcataaaataaaatctaatatttctttatttttggcagtttaatgtattctacaatt |
43756608 |
T |
|
| Q |
320 |
actatcccaatcgattgtctcaagtattattcgtggatgctcctgctgtgtttaagccattttggaggcttatgaagaagttgctaaaatcacatgcttc |
419 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
43756609 |
actatcccaatcgattgtctcaagtattattcgtggatgctcctgctgtgtttaagccattttggaggcttatgaagaagttgttaaaatcacatgcttc |
43756708 |
T |
|
| Q |
420 |
tcaggtaagcgttagcaattaatactagtattgtctgtgtatagtacgctaagggtggagatcgaaacctcgatctctttattacttcactttgcaattt |
519 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| |
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| T |
43756709 |
tcaggtaagcgttagcaattaatactagtattgtctgtgtatagtacgctaagggtggagatcgaaacttcaatctctttattacttcactttgcaattt |
43756808 |
T |
|
| Q |
520 |
tttcatcaagtcaccaagtcaactttatatccccgattaatgtgttatattggtgggagagttggacacctgacatttttatgattcatacctctataac |
619 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43756809 |
tttcatcaagtcaccaagtcaactttatatccccaattaatgtgttatattggtgggagagttggacacctgacatttttatgattcatacctctataac |
43756908 |
T |
|
| Q |
620 |
attcttctcac |
630 |
Q |
| |
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|||||| |||| |
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| T |
43756909 |
attcttatcac |
43756919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 49 - 201
Target Start/End: Original strand, 43761337 - 43761488
Alignment:
| Q |
49 |
tgtgttttcttgattgagaaggcattgagtaagcttcccactggggaagagcaaatacttgcaatatttgatctgagaggttttggtccagaaaatgctg |
148 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||| |||||| |||| || ||||||| |||||||||||| |||||||||||| |||||||||||| |
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| T |
43761337 |
tgtgttttcttaattgagaaggcattgagtaagcttccaactgggaaagaacagatacttggaatatttgatcttagaggttttggtacagaaaatgctg |
43761436 |
T |
|
| Q |
149 |
attttaaattcttggcattcttggtaatgttttttctactatctgtcaaatat |
201 |
Q |
| |
|
|| |||||| ||| |||||||||| |||||| | ||||||||| ||||||| |
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|
| T |
43761437 |
atcttaaatacttaacattcttggt-atgtttcgtttactatctgccaaatat |
43761488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 283 - 384
Target Start/End: Original strand, 43761603 - 43761704
Alignment:
| Q |
283 |
tttctttatttttggcagtttaatgtattctacaattactatcccaatcgattgtctcaagtattattcgtggatgctcctgctgtgtttaagccatttt |
382 |
Q |
| |
|
|||||||| ||| ||||||||||||| ||||| ||||||||||||| ||| ||||||||||| |||| |||||||||||| ||||||||| ||| ||| |
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|
| T |
43761603 |
tttctttactttgggcagtttaatgtgttctattattactatcccaagcgactgtctcaagtactatttgtggatgctccttttgtgtttaaaccaattt |
43761702 |
T |
|
| Q |
383 |
gg |
384 |
Q |
| |
|
|| |
|
|
| T |
43761703 |
gg |
43761704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 146; Significance: 1e-76; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 435 - 624
Target Start/End: Original strand, 13333804 - 13333993
Alignment:
| Q |
435 |
caattaatactagtattgtctgtgtatagtacgctaagggtggagatcgaaacctcgatctctttattacttcactttgcaattttttcatcaagtcacc |
534 |
Q |
| |
|
||||||||||||||||||||| |||||| || |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | ||||| |
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| T |
13333804 |
caattaatactagtattgtctttgtataatatgctaagggtggagatcgaaacctcaatctctttattacttcactttgcaattttttcattgaatcacc |
13333903 |
T |
|
| Q |
535 |
aagtcaactttatatccccgattaatgtgttatattggtgggagagttggacacctgacatttttatgattcatacctctataacattct |
624 |
Q |
| |
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| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
13333904 |
atgtcaagtttatatccccgattaatgtgttatattggtgggagagttggacacctgacatttttatctttcatacctctataacattct |
13333993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 435 - 619
Target Start/End: Complemental strand, 13334520 - 13334336
Alignment:
| Q |
435 |
caattaatactagtattgtctgtgtatagtacgctaagggtggagatcgaaacctcgatctctttattacttcactttgcaattttttcatcaagtcacc |
534 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||| || || |
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| T |
13334520 |
caattaatactagtattgtctgtgtatagtatgctaagggtggagattgaaacatcgatctctttattacttcactttgctattttttcatcaaatcgcc |
13334421 |
T |
|
| Q |
535 |
aagtcaactttatatccccgattaatgtgttatattggtgggagagttggacacctgacatttttatgattcatacctctataac |
619 |
Q |
| |
|
| || || ||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| |
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| T |
13334420 |
atgtaaagtttatatccccaattaatgtgttatattggtgggagagttggatacctgacatttttatgattcatacatctataac |
13334336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 21 - 214
Target Start/End: Original strand, 13333370 - 13333565
Alignment:
| Q |
21 |
acaggaccctgcagatgatcaaaggctgtgtgttttcttgattgagaaggcattgagtaagcttcccactggggaagagcaaatacttgcaatatttgat |
120 |
Q |
| |
|
||||||||| |||||||||||||| ||||||||||||| ||||||||||||||||||||| | |||||||||||||||||||| |||||||||||||| |
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|
| T |
13333370 |
acaggaccccacagatgatcaaaggttgtgtgttttcttaattgagaaggcattgagtaagttgcccactggggaagagcaaatgtttgcaatatttgat |
13333469 |
T |
|
| Q |
121 |
ctgagaggttttggtccagaaaatgctgattttaaattcttggcattcttggtaatg--ttttttctactatctgtcaaatatttttagttgaaaa |
214 |
Q |
| |
|
|| ||||||||||||| ||||||||||||| |||||| |||| ||||||||||||| |||||| |||||||| ||||||||||||||||||| |
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|
| T |
13333470 |
cttagaggttttggtctagaaaatgctgatcttaaatacttgaaattcttggtaatgttttttttatactatctacgaaatatttttagttgaaaa |
13333565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 282 - 427
Target Start/End: Complemental strand, 13334699 - 13334554
Alignment:
| Q |
282 |
atttctttatttttggcagtttaatgtattctacaattactatcccaatcgattgtctcaagtattattcgtggatgctcctgctgtgtttaagccattt |
381 |
Q |
| |
|
||||||||| |||||||||||| || | |||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| |
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|
| T |
13334699 |
atttctttacttttggcagtttgatatgttctactattactatcccaatcgattgtctcaagtattatttgtggatgctcctgctgtgtttaaaccattt |
13334600 |
T |
|
| Q |
382 |
tggaggcttatgaagaagttgctaaaatcacatgcttctcaggtaa |
427 |
Q |
| |
|
||| ||||||||||||||||| ||||||||||||||||| |||||| |
|
|
| T |
13334599 |
tggcggcttatgaagaagttgttaaaatcacatgcttcttaggtaa |
13334554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 20 - 211
Target Start/End: Complemental strand, 13334955 - 13334761
Alignment:
| Q |
20 |
aacaggaccctgcagatgatcaaaggctgtgtgttttcttgattgagaaggcattgagtaagcttcccactggggaagagcaaatacttgcaatatttga |
119 |
Q |
| |
|
|||||||||| ||||||||||| ||| ||| ||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
13334955 |
aacaggaccccgcagatgatcagaggttgtctgttttcttaattgagaaggcattgagtaagctttccactggggaagagcaaatacttgcaatatttga |
13334856 |
T |
|
| Q |
120 |
tctgagaggttttggtccagaaaatgctgattttaaattcttggcattcttggtaatg---ttttttctactatctgtcaaatatttttagttga |
211 |
Q |
| |
|
||| |||||||||||||| |||||||||||| | |||| |||| || |||| |||| |||||| |||||||| ||||||||||||||||| |
|
|
| T |
13334855 |
tcttagaggttttggtcctgaaaatgctgatctcaaatacttgaattttttggaaatgtatttttttatactatctaccaaatatttttagttga |
13334761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 283 - 427
Target Start/End: Original strand, 13333626 - 13333770
Alignment:
| Q |
283 |
tttctttatttttggcagtttaatgtattctacaattactatcccaatcgattgtctcaagtattattcgtggatgctcctgctgtgtttaagccatttt |
382 |
Q |
| |
|
|||||||| ||||| || ||| |||| |||||| ||||||||||||||| ||||||| |||||||||| |||||||||||||| |||||||||||||||| |
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|
| T |
13333626 |
tttctttacttttgacaatttgatgtgttctactattactatcccaatctattgtcttaagtattatttgtggatgctcctgcggtgtttaagccatttt |
13333725 |
T |
|
| Q |
383 |
ggaggcttatgaagaagttgctaaaatcacatgcttctcaggtaa |
427 |
Q |
| |
|
|| ||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
13333726 |
ggcggcttatgaagaagttgttaaaatcacatgcttctcaggtaa |
13333770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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