View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19302_low_3 (Length: 465)
Name: NF19302_low_3
Description: NF19302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19302_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 101 - 448
Target Start/End: Original strand, 1635643 - 1635991
Alignment:
| Q |
101 |
ctccattcccttatctttccctctaaactcgcaaactaagttttatttaccatggtttatctcgatcactcttgtttttccaacaatgaaattgannnnn |
200 |
Q |
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| T |
1635643 |
ctccattcccttatctttccctccaaactcgcaaactaagttttatttaccatggtttatctcgatcactcttgtttttccaacaatgaaattgattttt |
1635742 |
T |
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| Q |
201 |
nnn-cttcagatttaatcttttttctagtcatccaaaagcgttataatggaaatcggaaagccaaagcttaatttttcaacaatgtatgttaattaacaa |
299 |
Q |
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| T |
1635743 |
ttttcttcagatttaatcttttttctgatcatccaaaagcgttataatggaaatcgggaagccaaagcttaatttttcaacaatgtatgttaattaacaa |
1635842 |
T |
|
| Q |
300 |
gtttcatcaaactagtcaaaaaacaaattctatgaag--nnnnnnnntcatcaaatagttgttgagttcttgtcatgatttataccaccatcatgctttg |
397 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
1635843 |
atttcatcaaactagtcaaaaaacaaattctatgaagaaaaaaaaaatcatcaaatagttgttgagttcttgtcatgatt--taccaccatcatgctttg |
1635940 |
T |
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| Q |
398 |
tatcgtcgttgcgccgtcttcgatctcgccgccatgctgtgtcattatttt |
448 |
Q |
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| T |
1635941 |
tatcgtcgttgcaccgtcttcgatctcgccgccatgctgtgtcattatttt |
1635991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 42 - 102
Target Start/End: Original strand, 1635547 - 1635607
Alignment:
| Q |
42 |
taagattttgtattatgaagaaaaatgaactatgtgaagctccctcccgatgtatatttct |
102 |
Q |
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| T |
1635547 |
taagattttgtattatgaagaaaaatgaactacgtgaagccccctctcgatgtatatttct |
1635607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 43 - 71
Target Start/End: Complemental strand, 6491189 - 6491161
Alignment:
| Q |
43 |
aagattttgtattatgaagaaaaatgaac |
71 |
Q |
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| T |
6491189 |
aagattttgtattatgaagaaaaatgaac |
6491161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 43 - 71
Target Start/End: Original strand, 6491399 - 6491427
Alignment:
| Q |
43 |
aagattttgtattatgaagaaaaatgaac |
71 |
Q |
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| T |
6491399 |
aagattttgtattatgaagaaaaatgaac |
6491427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 43 - 71
Target Start/End: Complemental strand, 53013611 - 53013583
Alignment:
| Q |
43 |
aagattttgtattatgaagaaaaatgaac |
71 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
53013611 |
aagattttgtattatgaagaaaaatgaac |
53013583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 43 - 71
Target Start/End: Original strand, 718591 - 718619
Alignment:
| Q |
43 |
aagattttgtattatgaagaaaaatgaac |
71 |
Q |
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| T |
718591 |
aagattttgtattatgaagaaaaatgaac |
718619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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