View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19302_low_8 (Length: 258)
Name: NF19302_low_8
Description: NF19302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19302_low_8 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 16 - 258
Target Start/End: Complemental strand, 16174060 - 16173818
Alignment:
| Q |
16 |
atatgattctaaacatcaaaatatattaagaaggcctttaaatttatcataagaacttcatattgagatcataaccatctcatgggaacatcaaattaac |
115 |
Q |
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| T |
16174060 |
atatgattctaaacatcaaaatatattaagaaggcctttaaatttatcataagaacttcatattgagatcataaccatctcatgggaacatcaaattaac |
16173961 |
T |
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| Q |
116 |
aatattaaccaaggaaatagcagatcaaatgcaaacatcatgtcaatcataagatcaaaattcttcaataaaagagaacttgaaagtacaaatcagaagc |
215 |
Q |
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| T |
16173960 |
aatattaaccaaggaaatagcagatcaaatgcaaacatcatgtcaatcataagatcaaaattcttcaataaaagagaacttgaaagtacaaatcagaagc |
16173861 |
T |
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| Q |
216 |
acttcagattacatattagaagctattcataatggttagttca |
258 |
Q |
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| T |
16173860 |
acttcagattacatcttagaagctattcagaatggttagttca |
16173818 |
T |
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Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 28 - 108
Target Start/End: Complemental strand, 34483388 - 34483308
Alignment:
| Q |
28 |
acatcaaaatatattaagaaggcctttaaatttatcataagaacttcatattgagatcataaccatctcatgggaacatca |
108 |
Q |
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| T |
34483388 |
acatcaaaatgtgttaagaaggacttcagatttatcagaagttcttcagaatgagatcataaacatctcatgggaacatca |
34483308 |
T |
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