View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19303_high_1 (Length: 818)

Name: NF19303_high_1
Description: NF19303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19303_high_1
NF19303_high_1
[»] chr6 (9 HSPs)
chr6 (18-802)||(33467163-33467951)
chr6 (54-289)||(34604412-34604634)
chr6 (54-289)||(34725689-34725911)
chr6 (326-623)||(6080267-6080560)
chr6 (35-149)||(20430339-20430453)
chr6 (35-82)||(34728136-34728183)
chr6 (35-280)||(6079786-6080035)
chr6 (447-622)||(20429808-20429983)
chr6 (187-264)||(20430244-20430321)
[»] chr3 (2 HSPs)
chr3 (325-623)||(51449874-51450169)
chr3 (325-623)||(52137007-52137302)
[»] chr4 (3 HSPs)
chr4 (325-623)||(48624697-48624994)
chr4 (35-82)||(27453003-27453050)
chr4 (35-137)||(14145286-14145388)
[»] chr2 (6 HSPs)
chr2 (460-623)||(16291555-16291718)
chr2 (325-623)||(8178610-8178904)
chr2 (431-622)||(28217970-28218161)
chr2 (35-280)||(45329290-45329539)
chr2 (225-258)||(8178324-8178357)
chr2 (447-512)||(45328898-45328963)
[»] chr5 (3 HSPs)
chr5 (325-628)||(1289693-1289995)
chr5 (404-590)||(25879-26064)
chr5 (325-623)||(2077642-2077941)
[»] chr1 (2 HSPs)
chr1 (325-623)||(49349582-49349877)
chr1 (35-280)||(49350108-49350357)
[»] chr7 (3 HSPs)
chr7 (464-605)||(45878074-45878215)
chr7 (198-280)||(33250687-33250769)
chr7 (431-527)||(33251033-33251130)
[»] chr8 (2 HSPs)
chr8 (35-280)||(15217918-15218167)
chr8 (447-512)||(15217519-15217584)


Alignment Details
Target: chr6 (Bit Score: 726; Significance: 0; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 726; E-Value: 0
Query Start/End: Original strand, 18 - 802
Target Start/End: Original strand, 33467163 - 33467951
Alignment:
Q  18 atgaacgggatgcagtgaaaataagtaagggtttccacatcttcatgaatgggtgtgggtaaagacgtcggttcgtgaaagtaggattgatttttgaaca 117  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  33467163 atgaacgggatgcactgaaaataagtaagggtttccacatcttcatgaatgggtgtgggtaaagacgtcggttcgtgaaagtatgattgatttttgaaca 33467262  T
Q  118 tggaatataggcacccttacgggaaagtctatcaaaatagtggacaatatgactagaaggaattatttttgtgcatataagaaactaaatagtttggtga 217  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  33467263 tggaatataggcacccttacgggaaagtctatgaaaatagtggacaatatgactagaaggaattatttttgtgcatataagaaactaaatggtttggtga 33467362  T
Q  218 aaaggaaaaagaattagatggttcatgatttaagctttggtgcacggataaagttagatcgaggggattgatgttgttatggagaagacacctttaatgt 317  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33467363 aaaggaaaaagaattagattgttcatgatttaagctttggtgcacggataaagttagatcgaggggattgatgttgttatggagaagacacctttaatgt 33467462  T
Q  318 tattagtgaggggatttaaatggacatgttgggagtgttgcgagtggttttgagggcttacacgaagggggtgtggctttggagtaataaatgcggaagg 417  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  33467463 tattagtgaggggatttaaatggacatgctgggagtgttgcgagtggttttgagggcttacacaaagggggtgtggctttggagtaataaatgcggaagg 33467562  T
Q  418 taaatccatcctatagatttttcgtgtgctttgatcttactttagctaatacttgcttttggaaaagagaggaac-----atcttatcatatacaagagt 512  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     ||||||||||||||||||||    
T  33467563 taaatccatcctatagatttttcgtgtgctttgatcttactttagctaatacttgcttttggaaaagagaggaacatcttatcttatcatatacaagagt 33467662  T
Q  513 cttgtgaaatgttctaagatagatttctttaacattaggaaatcagacataaaaatttgtttggatcgtaaagtcatatctagagagagcttgactgctc 612  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33467663 cttgtgaaatgttataagatagatttctttaacattaggaaatcagacataaaaatttgtttggatcgtaaagtcatatctagagagagcttgactgctc 33467762  T
Q  613 aacatagagtgttggctatgaatgaaggagagtgaagagaagaaaccataggaagccataatgtggctatcaagtggtggcattttaaggaaaaaataaa 712  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33467763 aacatagagtgttggctatgaatgaaggagagtgaagagaagaaaccataggaagccataatgtggctatcaagtggtggcattttaaggaaaaaataaa 33467862  T
Q  713 ggtctttccaacacaaatttaccttaatcgatgaatactatccaatagactacttgacaacaaaatgaaatataattgacaccaacattg 802  Q
    ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  33467863 ggtctttccaacacaaatttaccttaatc-atgaatactatccattagactacttgacaacaaaatgaaatataattgacaccaacattg 33467951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 54 - 289
Target Start/End: Complemental strand, 34604634 - 34604412
Alignment:
Q  54 acatcttcatgaatgggtgtgggtaaagacgtcggttcgtgaaagtaggattgatttttgaacatggaatataggcacccttacgggaaagtctatcaaa 153  Q
    |||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| |||||||||        ||            |||| |||    
T  34604634 acatcttcatgaatgggtgtgggtaaagacatgggttcgtgaaagtaggattgatttttggacatggaatt-------cc------------ctatgaaa 34604554  T
Q  154 atagtggacaatat----gactagaaggaa--ttatttttgtgcatataagaaactaaatagtttggtgaaaaggaaaaagaattagatggttcatgatt 247  Q
    ||||||||||||||    ||||||||||||  |||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| ||||||||||    
T  34604553 atagtggacaatatatatgactagaaggaagattatttttgtgcatataagaaactaaatggttgggtgaaaaggaaaaagaattagatagttcatgatt 34604454  T
Q  248 taagctttggtgcacggataaagttagatcgaggggattgat 289  Q
    ||||||||||| |||  | |||||||||| |||||| |||||    
T  34604453 taagctttggtacactaaaaaagttagattgagggggttgat 34604412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 54 - 289
Target Start/End: Complemental strand, 34725911 - 34725689
Alignment:
Q  54 acatcttcatgaatgggtgtgggtaaagacgtcggttcgtgaaagtaggattgatttttgaacatggaatataggcacccttacgggaaagtctatcaaa 153  Q
    |||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| |||||||||        ||            |||| |||    
T  34725911 acatcttcatgaatgggtgtgggtaaagacatgggttcgtgaaagtaggattgatttttggacatggaatt-------cc------------ctatgaaa 34725831  T
Q  154 atagtggacaatat----gactagaaggaa--ttatttttgtgcatataagaaactaaatagtttggtgaaaaggaaaaagaattagatggttcatgatt 247  Q
    ||||||||||||||    ||||||||||||  |||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| ||||||||||    
T  34725830 atagtggacaatatatatgactagaaggaagattatttttgtgcatataagaaactaaatggttgggtgaaaaggaaaaagaattagatagttcatgatt 34725731  T
Q  248 taagctttggtgcacggataaagttagatcgaggggattgat 289  Q
    ||||||||||| |||  | |||||||||| |||||| |||||    
T  34725730 taagctttggtacactaaaaaagttagattgagggggttgat 34725689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 326 - 623
Target Start/End: Original strand, 6080267 - 6080560
Alignment:
Q  326 aggggatttaaatggacatgttgggagtgttgcgagtggttttgagggcttacacgaagggggtgtggctttggagtaataaatgcggaaggtaaatcca 425  Q
    ||||||||||||||| |||||  |||||||| |||| ||||||||||| || || |   ||||| |||  | || |  || |||| ||| ||||||||||    
T  6080267 aggggatttaaatgggcatgtacggagtgtttcgagaggttttgagggtttgcatg---ggggtatggtatcggggagattaatgtggagggtaaatcca 6080363  T
Q  426 tcctatagatttttcgtgtgcttt-gatcttactttagctaatacttgcttttggaaaagagaggaacatcttatcatatacaagagtcttgtgaaatgt 524  Q
    || ||  |||||||| |  ||||| ||||||||| ||||||||||||| ||  ||||||||||||| ||||||||||  |||||||||   ||   ||||    
T  6080364 tctta--gatttttcatcggcttttgatcttactatagctaatacttgtttcgggaaaagagaggagcatcttatcacttacaagagtgaggtctcatgt 6080461  T
Q  525 tctaagatagatttctttaacattaggaaatcagacataaaaatttgtttggatcgtaaagtcatatctagagagagcttgactgctcaacatagagtg 623  Q
    ||| | |||||||| |||   ||||||||||| ||||  || |||||||||||  ||||||||||| || |||||||||| ||| | ||||||||||||    
T  6080462 tctcaaatagatttatttcttattaggaaatccgacaggaagatttgtttggactgtaaagtcatacctggagagagcttaactacccaacatagagtg 6080560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 35 - 149
Target Start/End: Complemental strand, 20430453 - 20430339
Alignment:
Q  35 aaaataagtaagggtttccacatcttcatgaatgggtgtgggtaaagacgtcggttcgtgaaagtaggattgatttttgaacatggaatataggcaccct 134  Q
    |||||||||||||||| |||||||||| |||| ||||| ||||||||| |   |||| ||| |||||||||  |||| |||||||||||||||| || ||    
T  20430453 aaaataagtaagggttcccacatcttcgtgaacgggtgcgggtaaagaagctagttcatgagagtaggattcgttttggaacatggaatataggtactct 20430354  T
Q  135 tacgggaaagtctat 149  Q
    |||||| || |||||    
T  20430353 tacgggcaaatctat 20430339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 35 - 82
Target Start/End: Complemental strand, 34728183 - 34728136
Alignment:
Q  35 aaaataagtaagggtttccacatcttcatgaatgggtgtgggtaaaga 82  Q
    |||||||| |||||||||| ||||||||||||||||||||||||||||    
T  34728183 aaaataagcaagggtttccgcatcttcatgaatgggtgtgggtaaaga 34728136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 35 - 280
Target Start/End: Original strand, 6079786 - 6080035
Alignment:
Q  35 aaaataagtaagggtttccacatcttcatgaatgggtgtgggtaaagacgtcggttcgtgaaagtaggattgatttttgaacatggaatataggcaccct 134  Q
    |||||||| ||||||| || ||||||| |||| ||||| ||||||||| |   |||| ||| | |||||||  |||| |||| ||||||||||| || ||    
T  6079786 aaaataagcaagggttcccgcatcttcgtgaacgggtgcgggtaaagaagctagttcatgagaataggattcgttttggaacctggaatataggtacact 6079885  T
Q  135 tacgggaaagtctatcaaaatagtggacaatatgactagaagga--attatttt--tgtgcatataagaaactaaatagtttggtgaaaaggaaaaagaa 230  Q
    ||| ||||| |||||  || |||  ||||  |||||||| ||||  || | |||  ||||| || |||||||||| | | | ||  ||||||  ||||||    
T  6079886 tacaggaaaatctatggaagtagaagacacaatgactaggaggaggatcaatttcatgtgcctacaagaaactaagtgggtgggaaaaaaggcgaaagaa 6079985  T
Q  231 ttagatggttcatgatttaagctttggtgcacggataaagttagatcgag 280  Q
    |||||| ||||| |||||||||||||||  || | | |||||||||||||    
T  6079986 ttagatagttcaggatttaagctttggtatactggtcaagttagatcgag 6080035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 447 - 622
Target Start/End: Complemental strand, 20429983 - 20429808
Alignment:
Q  447 tttgatcttactttagctaatacttgcttttggaaaagagaggaacatcttatcatatacaagagtcttgtgaaatgttctaagatagatttctttaaca 546  Q
    |||||||||||| ||| |||||| |||||| ||||||||||||| ||||| ||||  || ||||||   |    |||||||  ||| |||||||||  ||    
T  20429983 tttgatcttactatagttaatacgtgctttaggaaaagagaggaccatctcatcacttataagagtggggcctcatgttctcggatggatttctttctca 20429884  T
Q  547 ttaggaaatcagacataaaaatttgtttggatcgtaaagtcatatctagagagagcttgactgctcaacatagagt 622  Q
    |||||||| ||||||  || || ||||| ||  ||||||||||| || |||||| ||| ||| | |||||||||||    
T  20429883 ttaggaaaacagacaggaagatctgtttagactgtaaagtcatacctggagagatcttaactacccaacatagagt 20429808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 264
Target Start/End: Complemental strand, 20430321 - 20430244
Alignment:
Q  187 tgtgcatataagaaactaaatagtttggtgaaaaggaaaaagaattagatggttcatgatttaagctttggtgcacgg 264  Q
    ||||| || |||||||||||| | | ||  ||||||  |||||||||||| ||||| ||||||||||||||| |||||    
T  20430321 tgtgcctacaagaaactaaatgggtggggaaaaaggcgaaagaattagatagttcaggatttaagctttggtacacgg 20430244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 70; Significance: 4e-31; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 325 - 623
Target Start/End: Complemental strand, 51450169 - 51449874
Alignment:
Q  325 gaggggatttaaatggacatgttgggagtgttgcgagtggttttgagggcttacacgaagggggtgtggctttggagtaataaatgcggaaggtaaatcc 424  Q
    |||||||||||||||| ||||| ||||||||| |||| ||||| ||||| || || |  |||||| |||  | || |  || |||||||| |||||||||    
T  51450169 gaggggatttaaatgggcatgtagggagtgtttcgagaggtttcgagggtttgcatg--gggggtatggtctcggggagattaatgcggagggtaaatcc 51450072  T
Q  425 atcctatagatttttcgtgtgcttt-gatcttactttagctaatacttgcttttggaaaagagaggaacatcttatcatatacaagagtcttgtgaaatg 523  Q
    ||| ||  |||||||| |  ||||| ||||||||| ||||||||||||| ||  |||||| |||||| ||||||||||  |||||||||   ||   |||    
T  51450071 atctta--gatttttcatcggcttttgatcttactatagctaatacttgtttcaggaaaatagaggagcatcttatcacttacaagagtggggtctcatg 51449974  T
Q  524 ttctaagatagatttctttaacattaggaaatcagacataaaaatttgtttggatcgtaaagtcatatctagagagagcttgactgctcaacatagagtg 623  Q
    |||| ||||||||||||||   ||||||||||| ||||  || |||||||||||  ||||||||||| || |||||||||| ||| | ||||||||||||    
T  51449973 ttctcagatagatttctttcttattaggaaatccgacaggaagatttgtttggactgtaaagtcatacctggagagagcttaactacccaacatagagtg 51449874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 325 - 623
Target Start/End: Original strand, 52137007 - 52137302
Alignment:
Q  325 gaggggatttaaatggacatgttgggagtgttgcgagtggttttgagggcttacacgaagggggtgtggctttggagtaataaatgcggaaggtaaatcc 424  Q
    |||||||||||||||| ||||| ||||||||| | || ||||||||||| || || |  |||||| |||  | || |  || |||||||| |||||||||    
T  52137007 gaggggatttaaatgggcatgtagggagtgtttcaagaggttttgagggtttgcatg--gggggtatggtctcggggagattaatgcggagggtaaatcc 52137104  T
Q  425 atcctatagatttttcgtgtgcttt-gatcttactttagctaatacttgcttttggaaaagagaggaacatcttatcatatacaagagtcttgtgaaatg 523  Q
    ||| ||  |||||||| |   |||| ||||||||| ||||||||||||| ||  ||||||||||||| |||| |||||  | |||||||   ||   |||    
T  52137105 atctta--gatttttcatcgacttttgatcttactatagctaatacttgtttcaggaaaagagaggagcatcctatcactttcaagagtggggtctcatg 52137202  T
Q  524 ttctaagatagatttctttaacattaggaaatcagacataaaaatttgtttggatcgtaaagtcatatctagagagagcttgactgctcaacatagagtg 623  Q
    |||| || |||||||||||   ||||||||||| ||||  || |||||||||||  |||||| |||| || |||||||||| ||| | ||||||||||||    
T  52137203 ttctcaggtagatttctttcttattaggaaatccgacaggaagatttgtttggactgtaaagacatacctggagagagcttaactacccaacatagagtg 52137302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 9e-26; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 325 - 623
Target Start/End: Complemental strand, 48624994 - 48624697
Alignment:
Q  325 gaggggatttaaatggacatgttgggagtgttgcgagtggttttgagggcttacacgaagggggtgtggctttggagtaataaatgcggaaggtaaatcc 424  Q
    |||||||||||||||| ||| | ||||||||| |||| ||||| ||||| || || |  |||||| |||  | || |  || ||||| || |||||||||    
T  48624994 gaggggatttaaatgggcatttagggagtgtttcgagaggtttcgagggtttgcatg--gggggtatggtctcggggagattaatgcagagggtaaatcc 48624897  T
Q  425 atcctatagatttttcgt-gtgctttgatcttactttagctaatacttgcttttggaaaagagaggaacatcttatcatatacaagagtcttgtgaaatg 523  Q
    ||| ||  |||||||| | | | |||||||||||| ||||||||||||| ||  ||||||||||||| ||||| ||||  |||||||||   ||   |||    
T  48624896 atctta--gatttttcattgggttttgatcttactatagctaatacttgtttcaggaaaagagaggagcatctaatcacttacaagagtggggtctcatg 48624799  T
Q  524 ttctaagatagatttctttaacattaggaaatcagacataaaaatttgtttggatcgtaaagtcatatct--agagagagcttgactgctcaacatagag 621  Q
    |||| ||||||||||||||   ||||||||||| ||||  || ||||||||||| |||||||||||| ||  ||||||||||| ||| | ||||||||||    
T  48624798 ttctcagatagatttctttcttattaggaaatctgacaggaagatttgtttggaccgtaaagtcatacctggagagagagcttaactacccaacatagag 48624699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 35 - 82
Target Start/End: Complemental strand, 27453050 - 27453003
Alignment:
Q  35 aaaataagtaagggtttccacatcttcatgaatgggtgtgggtaaaga 82  Q
    |||||||| |||||||||||||||||| |||| |||||||||||||||    
T  27453050 aaaataagcaagggtttccacatcttcgtgaacgggtgtgggtaaaga 27453003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 35 - 137
Target Start/End: Original strand, 14145286 - 14145388
Alignment:
Q  35 aaaataagtaagggtttccacatcttcatgaatgggtgtgggtaaagacgtcggttcgtgaaagtaggattgatttttgaacatggaatataggcaccct 134  Q
    |||||||| |||||| ||||||||||  |||| | ||||||||||||| ||  |||  ||| |||| |||   |||| |||||||||||| |||||||||    
T  14145286 aaaataagcaagggtctccacatctttgtgaacgagtgtgggtaaagaagttagttaatgagagtatgatctgttttagaacatggaataaaggcaccct 14145385  T
Q  135 tac 137  Q
    |||    
T  14145386 tac 14145388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 9e-23; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 460 - 623
Target Start/End: Original strand, 16291555 - 16291718
Alignment:
Q  460 tagctaatacttgcttttggaaaagagaggaacatcttatcatatacaagagtcttgtgaaatgttctaagatagatttctttaacattaggaaatcaga 559  Q
    ||||||||||||| ||  ||||||||||||| ||||||||||  |||||||||   ||  |||||||| | ||||||||||||   ||||||||||| ||    
T  16291555 tagctaatacttgtttcaggaaaagagaggagcatcttatcacttacaagagtggggtctaatgttctcaaatagatttctttcttattaggaaatctga 16291654  T
Q  560 cataaaaatttgtttggatcgtaaagtcatatctagagagagcttgactgctcaacatagagtg 623  Q
    ||  || |||||||||||  ||||||||||| || | |||||||| ||||| ||||||||||||    
T  16291655 caggaatatttgtttggactgtaaagtcatacctggggagagcttaactgcccaacatagagtg 16291718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 325 - 623
Target Start/End: Original strand, 8178610 - 8178904
Alignment:
Q  325 gaggggatttaaatggacatgttgggagtgttgcgagtggttttgagggcttacacgaagggggtgtggctttggagtaataaatgcggaaggtaaatcc 424  Q
    |||||||||||||||| ||||| ||||||||| |||| ||||| ||||| || || |   ||||| |||  | || |  || |||||||| |||||||||    
T  8178610 gaggggatttaaatgggcatgtagggagtgtttcgagaggtttcgagggtttgcatg---ggggtatggtctcggggagattaatgcggagggtaaatcc 8178706  T
Q  425 atcctatagatttttcgtgtgcttt-gatcttactttagctaatacttgcttttggaaaagagaggaacatcttatcatatacaagagtcttgtgaaatg 523  Q
    ||| ||  |||||||| |  ||||| ||||||||| ||||||||||||| ||  |||||| |||||| ||| ||||||  |||||||||   ||   |||    
T  8178707 atctta--gatttttcatcagcttttgatcttactatagctaatacttgtttcaggaaaatagaggagcattttatcacttacaagagtggggtctcatg 8178804  T
Q  524 ttctaagatagatttctttaacattaggaaatcagacataaaaatttgtttggatcgtaaagtcatatctagagagagcttgactgctcaacatagagtg 623  Q
    |||| ||||||||||||||   ||||||||| | ||||  || |||||||||||  ||||||||||| || ||||||| || ||| | ||||||||||||    
T  8178805 ttctcagatagatttctttcttattaggaaagccgacaggaagatttgtttggactgtaaagtcatacctggagagagtttaactacccaacatagagtg 8178904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 431 - 622
Target Start/End: Complemental strand, 28218161 - 28217970
Alignment:
Q  431 tagatttttcgtgtgctttgatcttactttagctaatacttgcttttggaaaagagaggaacatcttatcatatacaagagtcttgtgaaatgttctaag 530  Q
    ||||||||||||  | ||||||| |||| ||  |||||| || ||| |||||||||| ||||||||||||| || ||||| |   ||||  | |||| ||    
T  28218161 tagatttttcgttcgttttgatcctactataattaatacatgttttaggaaaagagatgaacatcttatcacatgcaagaatggggtgacttattctcag 28218062  T
Q  531 atagatttctttaacattaggaaatcagacataaaaatttgtttggatcgtaaagtcatatctagagagagcttgactgctcaacatagagt 622  Q
    ||||||||||||   |||||||||||| ||   || |||| ||||||  ||||||||||| || |||||||||| ||| | ||| |||||||    
T  28218061 atagatttctttcttattaggaaatcaaacgagaagatttttttggactgtaaagtcatacctggagagagcttaactacccaaaatagagt 28217970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 35 - 280
Target Start/End: Complemental strand, 45329539 - 45329290
Alignment:
Q  35 aaaataagtaagggtttccacatcttcatgaatgggtgtgggtaaagacgtcggttcgtgaaagtaggattgatttttgaacatggaatataggcaccct 134  Q
    |||||||| ||||||| |||||||| | | || ||||| ||||||||| |   |||| | | |||||||||  |||| |||| ||||||||||| || ||    
T  45329539 aaaataagcaagggttcccacatctacgtaaacgggtgcgggtaaagaagctagttcattagagtaggattcgttttggaacttggaatataggtactct 45329440  T
Q  135 tacgggaaagtctatcaaaatagtggacaatatgactagaagga--attattttt--gtgcatataagaaactaaatagtttggtgaaaaggaaaaagaa 230  Q
    |||||| || |||||  ||||||| |||| ||||| ||| ||||  || | ||||  |||| || |||| ||||| | | |  |  ||||||  ||||||    
T  45329439 tacgggtaaatctatagaaatagtagacactatgattaggaggaggatcaattttatgtgcctacaagagactaagtgggtgaggaaaaaggcgaaagaa 45329340  T
Q  231 ttagatggttcatgatttaagctttggtgcacggataaagttagatcgag 280  Q
    |||||| ||||| ||||||||||||||| |||||   |||||||||||||    
T  45329339 ttagatagttcaggatttaagctttggtacacgggcgaagttagatcgag 45329290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 225 - 258
Target Start/End: Original strand, 8178324 - 8178357
Alignment:
Q  225 aaagaattagatggttcatgatttaagctttggt 258  Q
    |||||||||||| |||||||||||||||||||||    
T  8178324 aaagaattagatagttcatgatttaagctttggt 8178357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 447 - 512
Target Start/End: Complemental strand, 45328963 - 45328898
Alignment:
Q  447 tttgatcttactttagctaatacttgcttttggaaaagagaggaacatcttatcatatacaagagt 512  Q
    |||||||||||| | |||||||| || ||| ||||||||||||| ||||| ||||  |||||||||    
T  45328963 tttgatcttactatcgctaatacgtgttttaggaaaagagaggagcatctcatcacttacaagagt 45328898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 1e-21; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 325 - 628
Target Start/End: Complemental strand, 1289995 - 1289693
Alignment:
Q  325 gaggggatttaaatggacatgttgggagtgttgcgagtggttttgagggcttacacgaagggggtgtggctttggagtaataaatgcggaaggtaaatcc 424  Q
    |||||||||||||||| ||||| ||||||||| |||| ||||||||||| || || |  |||||| |||  | || |  || ||| |||| |||||||||    
T  1289995 gaggggatttaaatgggcatgtagggagtgtttcgagaggttttgagggtttgcatg--gggggtatggtctcggggagattaatacggagggtaaatcc 1289898  T
Q  425 atcctatagatttttcgtgtgcttt-gatcttactttagctaatacttgcttttggaaaagagaggaacatcttatcatatacaagagtcttgtgaaatg 523  Q
    ||| ||  |||||| | |  ||||| ||||||||| ||||||||||||| ||  ||||||||||||| ||||||||||  |||||||||   ||   |||    
T  1289897 atctta--gattttacatcggcttttgatcttactatagctaatacttgtttcaggaaaagagaggagcatcttatcacttacaagagtgaggtctcatg 1289800  T
Q  524 ttctaag--atagatttctttaacattaggaaatcagacataaaaatttgtttggatcgtaaagtcatatctagagagagcttgactgctcaacatagag 621  Q
    |||| ||  ||| ||||||||   ||||||||||| ||||  || |||||||| ||  ||||||||||| || |||||||||| ||| | ||||||||||    
T  1289799 ttctcagatatatatttctttcttattaggaaatccgacaggaagatttgtttagactgtaaagtcatacctggagagagcttaactacccaacatagag 1289700  T
Q  622 tgttggc 628  Q
    || ||||    
T  1289699 tgatggc 1289693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 404 - 590
Target Start/End: Original strand, 25879 - 26064
Alignment:
Q  404 ataaatgcggaaggtaaatccatcctatagatttttcgtgtgcttt-gatcttactttagctaatacttgcttttggaaaagagaggaacatcttatcat 502  Q
    ||||||| ||| ||||||| |||||||  ||||||| ||  ||||| ||||||| | |||||||||| || |||||||| |||||||| ||||||||||     
T  25879 ataaatgtggagggtaaattcatccta--gattttttgtcggcttttgatcttattatagctaatacgtgtttttggaacagagaggagcatcttatcac 25976  T
Q  503 atacaagagtcttgtgaaatgttctaagatagatttctttaacattaggaaatcagacataaaaatttgtttggatcgtaaagtcata 590  Q
     |||||||||    | | ||||||| |||||||||| |||   |||||||| ||| ||||||| ||||||||||| ||||||||||||    
T  25977 ttacaagagtgcgataatatgttctcagatagatttttttcttattaggaattcatacataaagatttgtttggaccgtaaagtcata 26064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 325 - 623
Target Start/End: Complemental strand, 2077941 - 2077642
Alignment:
Q  325 gaggggatttaaatggacatgttgggagtgttgcgagtggttttgagggcttacacgaagggggtgtggctttggagtaataaatgcggaaggtaaatcc 424  Q
    |||||||||||||||| ||||| ||||||||| |||| ||||| ||||| || || |  |||||| |||  | || |  || |||||||| |||||||||    
T  2077941 gaggggatttaaatgggcatgtagggagtgtttcgagaggtttcgagggtttgcatg--gggggtatggtctcggggagattaatgcggagggtaaatcc 2077844  T
Q  425 atcctatagatttttcgtgtgcttt-gatcttactttagctaatacttgcttt----tggaaaagagaggaacatcttatcatatacaagagtcttgtga 519  Q
    ||| ||  ||| |||| |  ||||| ||||||||| ||||||||||||| ||     |||||||||||||| ||||||||||  | |||||||   ||      
T  2077843 atctta--gatgtttcatcggcttttgatcttactatagctaatacttgtttcaggatggaaaagagaggagcatcttatcactttcaagagtggggtct 2077746  T
Q  520 aatgttctaagatagatttctttaacattaggaaatcagacataaaaatttgtttggatcgtaaagtcatatctagagagagcttgactgctcaacatag 619  Q
     ||||||| |  |||||||||||   ||||||||||| ||||  || |||||||||||  ||||||||||| || ||| |||||| ||| | ||||||||    
T  2077745 catgttctcatgtagatttctttcttattaggaaatccgacaggaagatttgtttggactgtaaagtcatacctggagtgagcttaactacccaacatag 2077646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 1e-21; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 325 - 623
Target Start/End: Complemental strand, 49349877 - 49349582
Alignment:
Q  325 gaggggatttaaatggacatgttgggagtgttgcgagtggttttgagggcttacacgaagggggtgtggctttggagtaataaatgcggaaggtaaatcc 424  Q
    |||||||||||||||| ||||| ||||||||| |||| ||||| ||||| || || |  |||| | |||  | || |  || |||||||| |||||||||    
T  49349877 gaggggatttaaatgggcatgtagggagtgtttcgagaggtttcgagggtttgcatg--ggggatatggtctcggggagattaatgcggagggtaaatcc 49349780  T
Q  425 atcctatagatttttcgtgtgcttt-gatcttactttagctaatacttgcttttggaaaagagaggaacatcttatcatatacaagagtcttgtgaaatg 523  Q
    ||| ||  |||||||| |  ||||| ||||||||| ||||||||||||| ||  |||||| ||| || ||||||||||  |||||||||   ||   |||    
T  49349779 atctta--gatttttcatcggcttttgatcttactatagctaatacttgtttcaggaaaatagatgagcatcttatcacttacaagagtggggtctcatg 49349682  T
Q  524 ttctaagatagatttctttaacattaggaaatcagacataaaaatttgtttggatcgtaaagtcatatctagagagagcttgactgctcaacatagagtg 623  Q
    |||| ||||||||||||||   ||||||||||| | ||  || |||||||||||  ||||||||||| || |||||||||| |||   ||||||||||||    
T  49349681 ttctcagatagatttctttcttattaggaaatccgtcaggaagatttgtttggactgtaaagtcatacctggagagagcttaactatccaacatagagtg 49349582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 35 - 280
Target Start/End: Complemental strand, 49350357 - 49350108
Alignment:
Q  35 aaaataagtaagggtttccacatcttcatgaatgggtgtgggtaaagacgtcggttcgtgaaagtaggattgatttttgaacatggaatataggcaccct 134  Q
    |||||||| ||||||| || |||||||||||| | ||| ||||||||| |   |||| ||| | |||||||  |||| |||| ||||||||||| || ||    
T  49350357 aaaataagcaagggttcccgcatcttcatgaacgagtgcgggtaaagaagctagttcatgagaataggattcgttttggaacttggaatataggtacact 49350258  T
Q  135 tacgggaaagtctatcaaaatagtggacaatatgactagaagga--attatttt--tgtgcatataagaaactaaatagtttggtgaaaaggaaaaagaa 230  Q
    ||| ||||| |||||  || |||| ||||  |||||||| ||||  || | |||  ||||| || |||||||||| | | | ||  ||||||  ||||||    
T  49350257 tacaggaaaatctatggaagtagtagacacaatgactaggaggaggatcaatttcatgtgcctacaagaaactaagtgggtggggaaaaaggcgaaagaa 49350158  T
Q  231 ttagatggttcatgatttaagctttggtgcacggataaagttagatcgag 280  Q
    |||||| ||||| |||||||||||||||  || | | |||||||||||||    
T  49350157 ttagatagttcaggatttaagctttggtatactggtgaagttagatcgag 49350108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 464 - 605
Target Start/End: Complemental strand, 45878215 - 45878074
Alignment:
Q  464 taatacttgcttttggaaaagagaggaacatcttatcatatacaagagtcttgtgaaatgttctaagatagatttctttaacattaggaaatcagacata 563  Q
    ||||||||||||| ||||||| ||||||||| |||||| ||||||||||   |||| ||| ||| ||||||||| || |   |||||||||||| ||  |    
T  45878215 taatacttgctttaggaaaagggaggaacattttatcacatacaagagtgaggtgacatgctctcagatagattgctctcttattaggaaatcaaactga 45878116  T
Q  564 aaaatttgtttggatcgtaaagtcatatctagagagagcttg 605  Q
    || |||||||||||   |||||||||| |  |||||||||||    
T  45878115 aagatttgtttggactctaaagtcataccaggagagagcttg 45878074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 198 - 280
Target Start/End: Original strand, 33250687 - 33250769
Alignment:
Q  198 gaaactaaatagtttggtgaaaaggaaaaagaattagatggttcatgatttaagctttggtgcacggataaagttagatcgag 280  Q
    |||||||||| | | ||||||||||||||||||| | || | ||| ||||||||||||||| ||| || ||||||||||||||    
T  33250687 gaaactaaatgggtgggtgaaaaggaaaaagaatcatataggtcaagatttaagctttggtacactgagaaagttagatcgag 33250769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 431 - 527
Target Start/End: Original strand, 33251033 - 33251130
Alignment:
Q  431 tagatttttcgtgtgcttt-gatcttactttagctaatacttgcttttggaaaagagaggaacatcttatcatatacaagagtcttgtgaaatgttct 527  Q
    |||||||||||| |||||| |||| |||| |||||||||| || ||  | |||||||||||| ||||||||| ||| |||||| | |||| |||||||    
T  33251033 tagatttttcgtctgcttttgatcatactatagctaatacatgattcagaaaaagagaggaagatcttatcacatagaagagtgtggtgatatgttct 33251130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 35 - 280
Target Start/End: Complemental strand, 15218167 - 15217918
Alignment:
Q  35 aaaataagtaagggtttccacatcttcatgaatgggtgtgggtaaagacgtcggttcgtgaaagtaggattgatttttgaacatggaatataggcaccct 134  Q
    |||||||| ||||||| |||||||||| ||||  |||| ||||||||| |   |||| ||| |||||||||  |||| |||| ||||||||||| || ||    
T  15218167 aaaataagcaagggttcccacatcttcgtgaacaggtgcgggtaaagaagctagttcatgagagtaggattcgttttggaacttggaatataggtactct 15218068  T
Q  135 tacgggaaagtctatcaaaatagtggacaatatgactagaaggaa---ttatttt-tgtgcatataagaaactaaatagtttggtgaaaaggaaaaagaa 230  Q
    |||| | || |||||  || |||| |||| |||||| || ||||    | ||||| ||||  || |||||||||| | | | ||  ||||||  ||||||    
T  15218067 tacgtgtaaatctatggaagtagtagacactatgacaaggaggaggactaattttatgtgtctacaagaaactaagtgggtggggaaaaaggtgaaagaa 15217968  T
Q  231 ttagatggttcatgatttaagctttggtgcacggataaagttagatcgag 280  Q
    |||||| ||||| ||||||||||||||| |||||   |||||||||||||    
T  15217967 ttagatagttcaggatttaagctttggtacacgggcgaagttagatcgag 15217918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 447 - 512
Target Start/End: Complemental strand, 15217584 - 15217519
Alignment:
Q  447 tttgatcttactttagctaatacttgcttttggaaaagagaggaacatcttatcatatacaagagt 512  Q
    |||||||||||| |||||||||| || ||| ||||||||||||| ||||| ||||  |||||||||    
T  15217584 tttgatcttactatagctaatacgtgttttaggaaaagagaggagcatctcatcacttacaagagt 15217519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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