View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19303_high_10 (Length: 446)
Name: NF19303_high_10
Description: NF19303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19303_high_10 |
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Alignment Details
Target: chr2 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 12 - 430
Target Start/End: Original strand, 41364998 - 41365415
Alignment:
| Q |
12 |
atgaaagacacaaatcaaacaatggactcaaatgactctaaaattacatttgatgatgaatcatccctaagcttcacaggtacgcaaaagcaattgtcac |
111 |
Q |
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| T |
41364998 |
atgaaagacacaaatcaaacaatgaactcaaatgactctaaaattacatttgatgatgaatcatccctaagcttcacaggtacgcaaaagcaattgtcac |
41365097 |
T |
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| Q |
112 |
tccacgttcttcatgcaactcacaatctcgnnnnnnnnnnnnnnnnnnncaaaactaatgcgagtaattcagatccgcctggatcaagttaaagcactaa |
211 |
Q |
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| T |
41365098 |
tccacgttcttcatgcaactcacaatctcgttttcttttttcattttt-caaaactaatgcgggcaattcagatccgcctggatcaagttaaagcactaa |
41365196 |
T |
|
| Q |
212 |
tcatcaaatcaattgtacccggattctttgatttcttcatcaagaatcttctcatcaaacacgattcttttgcgacacaatggctttcgtttcatgggtg |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41365197 |
tcatcaaatcaattgtacccggattctttgatttcttcatcaagaatcttctcatcaaacacgattcttttgcgacacaatggctttcgtttcatgggtg |
41365296 |
T |
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| Q |
312 |
tctttgttattatggttttcttcttgcagggtgcaccaggacattcaagaatcggtgggattttgtgatctgaagatgtgggagtcttgaacccatcatt |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41365297 |
tctttgttattatggttttcttcttgcagggtgcaccaggacattcaaaaatcggtgggattttgtgatctgaagatgtgggagtcttgaacccatcatt |
41365396 |
T |
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| Q |
412 |
gttgttgtcgtgcaatatt |
430 |
Q |
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| T |
41365397 |
gttgttgtcttgcaatatt |
41365415 |
T |
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