View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19303_high_13 (Length: 404)
Name: NF19303_high_13
Description: NF19303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19303_high_13 |
 | |
|
| [»] scaffold0008 (2 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 356; Significance: 0; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 10 - 388
Target Start/End: Complemental strand, 6152382 - 6152003
Alignment:
| Q |
10 |
atatgaaaataaagcacatctttaaccgtgaattcatttatactaat-tcaaccaaagttaatattaacaagtaattaagaaagtatatatacctcaatc |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6152382 |
atatgaaaataaagcacatctttaaccgtgaattcatttatactaatatcaaccaaagttaatattaacaagtaattaagaaagtatatatacctcaatc |
6152283 |
T |
|
| Q |
109 |
ctgagcctgttcctctctggcctaagttcatgagaagttgaaatgaaattgtggtgaatgccaccatggctagctacattctctgatcttggcgatcctg |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
6152282 |
ctgagcctgttcctctctggcctaagttcatgagaagttgaaatgaaattgtggtgaatgccaccatggctagttacattctctgatcttggcgatcctg |
6152183 |
T |
|
| Q |
209 |
aactagtctgaatgtactgatcagtttgcgcagcaatagtaaatccgaatccaagaggagctggaggagggtttagctggtaataattactcggcgaagg |
308 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
6152182 |
aactagtctgaatgtactgatcagtttgtgcagcaatagtaaatccgaatccaagaggagctggaggagggtttagctggtaataattactcggtgaagg |
6152083 |
T |
|
| Q |
309 |
gtttaaagtcgttattggttgccgtggtggtacaaaactactcggcgaagggtcaacttgtaaaccttgattagaagttt |
388 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6152082 |
gtttaaagtcgttattggttgccgtggtggtacagaactactcggcgaagggtcaacttgtaaaccttgattagaagttt |
6152003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 13 - 350
Target Start/End: Complemental strand, 6146193 - 6145855
Alignment:
| Q |
13 |
tgaaaataaagcacatctttaaccgtgaattcatttatactaat-tcaaccaaagttaatattaacaagtaattaagaaagtatatatacctcaatcctg |
111 |
Q |
| |
|
||||||| |||||||||||||| | ||||||||||||||||||| ||||||||||| ||||||| ||||||| | ||||||||||| |||||||| |||| |
|
|
| T |
6146193 |
tgaaaatgaagcacatctttaaacatgaattcatttatactaatatcaaccaaagtcaatattatcaagtaacttagaaagtatatgtacctcaaccctg |
6146094 |
T |
|
| Q |
112 |
agcctgttcctctctggcctaagttcatgagaagttgaaatgaaattgtggtgaatgccaccatggctagctacattctctgatcttggcgatcctgaac |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
6146093 |
tgcctgttcctctctggcctaagttcatgagaagttgaaattaaattgtggtgaatgccaccatggctagctacattctctaatcttggcgatcctgaac |
6145994 |
T |
|
| Q |
212 |
tagtctgaatgtactgatcagtttgcgcagcaatagtaaatccgaatccaagaggagctggaggagggtttagctggtaataattactcggcgaagggtt |
311 |
Q |
| |
|
||| |||||||||| ||||||||| ||| ||||||||| |||| |||||||||||| | ||||||||||||| |||||| ||||||||| |||| || |
|
|
| T |
6145993 |
cagtttgaatgtactcatcagtttgtgcaacaatagtaagtccggatccaagaggagacgaaggagggtttagccggtaattattactcggtgaagcgtc |
6145894 |
T |
|
| Q |
312 |
taaagtcgttattggttgccgtggtggtacaaaactact |
350 |
Q |
| |
|
| ||||| |||||| ||| | ||||||||| ||||||| |
|
|
| T |
6145893 |
tgaagtcattattgtttgttgcggtggtacataactact |
6145855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 21 - 350
Target Start/End: Complemental strand, 6126769 - 6126439
Alignment:
| Q |
21 |
aagcacatctttaaccgtgaattcatttatactaattc-aaccaaagttaatattaacaagtaattaagaaagtatatatacctcaatcctgagcctgtt |
119 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||| | || |||||||||||||| ||||||| |||||||||||||||||||||| | ||||| |||| |
|
|
| T |
6126769 |
aagcacatctttaaccatgaattcatttatactaataccaaacaaagttaatattatcaagtaactaagaaagtatatatacctcaaccatgagcatgtt |
6126670 |
T |
|
| Q |
120 |
cctctctggcctaagttcatgagaagttgaaatgaaattgtggtgaatgccaccatggctagctacattctctgatcttggcgatcctgaactagtctga |
219 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| ||||||| |||||| |
|
|
| T |
6126669 |
cctctctagcctaagttcatgagaagttgaaatgaaattgccgtaaatgccaccatggctagctacattctctgatcttggtaatcctgattcagtctgg |
6126570 |
T |
|
| Q |
220 |
atgtactgatcagtttgcgcagcaatagtaaatccgaatccaagaggagctggaggagggtttagctggtaataattactcggcgaagggtttaaagtcg |
319 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||| ||||||||||| ||||||||||||||| ||| |||||||||| |||||| || | |||| | |
|
|
| T |
6126569 |
atgtactgatcagtttgtgcagcaatagtaaatccggatccaagaggaaacggaggagggtttagccggttataattactcagcgaagcgtctgaagttg |
6126470 |
T |
|
| Q |
320 |
ttattggttgccgtggtggtacaaaactact |
350 |
Q |
| |
|
|||||||||| ||||||||| | ||||||| |
|
|
| T |
6126469 |
ttattggttgttgtggtggtatagaactact |
6126439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 13 - 348
Target Start/End: Complemental strand, 34283975 - 34283641
Alignment:
| Q |
13 |
tgaaaataaagcacatctttaaccgtgaattcatttatactaat--tcaaccaaagttaatattaacaagtaattaagaaagtatatatacctcaatcct |
110 |
Q |
| |
|
||||||| |||||||| ||||| |||||||||||||| ||||| ||||||||| |||||||||| ||||||||||||||| ||||||||||||| ||| |
|
|
| T |
34283975 |
tgaaaatgaagcacattattaacggtgaattcatttattctaatcttcaaccaaatttaatattaataagtaattaagaaagcatatatacctcaaccct |
34283876 |
T |
|
| Q |
111 |
gagcctgttcctctctggcctaagttcatgagaagttgaaatgaaattgtggtgaatgccaccatggctagctacattctctgatcttggcgatcctgaa |
210 |
Q |
| |
|
|||| | | ||||||| | ||||||||||||| |||||||||||||||||| | | || | || | ||||| ||||||||||| ||||||||||| |
|
|
| T |
34283875 |
gagcatttccctctctatcgaaagttcatgagaatttgaaatgaaattgtggtaactaccgttagagcgaactacagtctctgatctttgcgatcctgaa |
34283776 |
T |
|
| Q |
211 |
ctagtctgaatgtactgatcagtttgcgcagcaatagtaaatccgaatccaagaggagctggaggagggtttagctggtaataattactcggcgaagggt |
310 |
Q |
| |
|
| ||||| |||||||||| |||||| || ||||||||||||| ||||| || ||| ||||| |||||||||| ||||||||||||| | ||| | |
|
|
| T |
34283775 |
ccagtctaaatgtactgaatagtttgtacatcaatagtaaatcccgatccaggaagagatggagaagggtttagc---taataattactcgatggaggat |
34283679 |
T |
|
| Q |
311 |
ttaaagtcgttattggttgccgtggtggtacaaaacta |
348 |
Q |
| |
|
| |||||||||||||||| |||||||||||||||||| |
|
|
| T |
34283678 |
ctgaagtcgttattggttgtcgtggtggtacaaaacta |
34283641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 13 - 280
Target Start/End: Original strand, 34282628 - 34282895
Alignment:
| Q |
13 |
tgaaaataaagcacatctttaaccgtgaattcatttatactaat--tcaaccaaagttaatattaacaagtaattaagaaagtatatatacctcaatcct |
110 |
Q |
| |
|
||||||| ||||||| ||||| |||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||| || |||||| ||| ||| |
|
|
| T |
34282628 |
tgaaaatggagcacattattaacggtgaattcatttattctaatattcaaccaatgttaatattaacaagtaattaagaaagaatttataccccaaccct |
34282727 |
T |
|
| Q |
111 |
gagcctgttcctctctggcctaagttcatgagaagttgaaatgaaattgtggtgaatgccaccatggctagctacattctctgatcttggcgatcctgaa |
210 |
Q |
| |
|
||||| ||||||| | || ||||||||||||||||||||||||||||| | |||||| | | |||| | ||||||||||||| ||| |||| |
|
|
| T |
34282728 |
gagccatgccctctctatcaaaatttcatgagaagttgaaatgaaattgtggtaagtgccactagagtgagct--agtctctgatcttggaaatcttgaa |
34282825 |
T |
|
| Q |
211 |
ctagtctgaatgtactgatcagtttgcgcagcaatagtaaatccgaatccaagaggagctggaggagggt |
280 |
Q |
| |
|
|||| |||||||| || | ||| || || ||||||||||||| ||||| |||||| ||||| ||||| |
|
|
| T |
34282826 |
ctagcatgaatgtattggttagtctgtgcgacaatagtaaatcccgatccaggaggagatggagaagggt |
34282895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 76 - 156
Target Start/End: Complemental strand, 6139437 - 6139357
Alignment:
| Q |
76 |
acaagtaattaagaaagtatatatacctcaatcctgagcctgttcctctctggcctaagttcatgagaagttgaaatgaaa |
156 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||| |||||||||| ||||||||||| |||||||||||||||| |
|
|
| T |
6139437 |
acaagtaattaagaaagtatatatacctcatccctgagagcgttcctctcttccctaagttcattagaagttgaaatgaaa |
6139357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 56 - 100
Target Start/End: Original strand, 33802369 - 33802413
Alignment:
| Q |
56 |
ttcaaccaaagttaatattaacaagtaattaagaaagtatatata |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33802369 |
ttcaaccaaagttaatattaacaagtaattaagaaagtatatata |
33802413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 56 - 100
Target Start/End: Original strand, 33731025 - 33731068
Alignment:
| Q |
56 |
ttcaaccaaagttaatattaacaagtaattaagaaagtatatata |
100 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
33731025 |
ttcaaccaaagttaatatta-caagtaattaagaaagtatatata |
33731068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: scaffold0008
Description:
Target: scaffold0008; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 40 - 156
Target Start/End: Original strand, 7802 - 7917
Alignment:
| Q |
40 |
aattcatttatactaatt--caaccaaagttaatattaacaagtaattaagaaagtatatatacctcaatcctgagcctgttcctctctggcctaagttc |
137 |
Q |
| |
|
||||||||||||||||| |||||||| |||| | |||||||||||||||||||||||||||||| |||||| ||||||| || ||||||||| |
|
|
| T |
7802 |
aattcatttatactaatgaacaaccaaa---aataatcacaagtaattaagaaagtatatatacctcatccctgagagcgttcctcccttccctaagttc |
7898 |
T |
|
| Q |
138 |
atgagaagttgaaatgaaa |
156 |
Q |
| |
|
|| |||||||||||||||| |
|
|
| T |
7899 |
atcagaagttgaaatgaaa |
7917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 40 - 156
Target Start/End: Original strand, 18383 - 18498
Alignment:
| Q |
40 |
aattcatttatactaatt--caaccaaagttaatattaacaagtaattaagaaagtatatatacctcaatcctgagcctgttcctctctggcctaagttc |
137 |
Q |
| |
|
||||||||||||||||| |||||||| |||| | |||||||||||||||||||||||||||||| |||||| ||||||| || ||||||||| |
|
|
| T |
18383 |
aattcatttatactaatgaacaaccaaa---aataatcacaagtaattaagaaagtatatatacctcatccctgagagcgttcctcccttccctaagttc |
18479 |
T |
|
| Q |
138 |
atgagaagttgaaatgaaa |
156 |
Q |
| |
|
|| |||||||||||||||| |
|
|
| T |
18480 |
atcagaagttgaaatgaaa |
18498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 76 - 156
Target Start/End: Complemental strand, 25364234 - 25364154
Alignment:
| Q |
76 |
acaagtaattaagaaagtatatatacctcaatcctgagcctgttcctctctggcctaagttcatgagaagttgaaatgaaa |
156 |
Q |
| |
|
||||||||||||||||| |||||||||||| | |||| |||||||||| ||||||||||| |||||||||||||||| |
|
|
| T |
25364234 |
acaagtaattaagaaagcatatatacctcatccatgagagcgttcctctcttccctaagttcatcagaagttgaaatgaaa |
25364154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University