View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19303_high_14 (Length: 388)
Name: NF19303_high_14
Description: NF19303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19303_high_14 |
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Alignment Details
Target: chr4 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 1 - 378
Target Start/End: Original strand, 18975005 - 18975381
Alignment:
| Q |
1 |
atagtccaatcttaattgaatgactatcaatgttacgaatgcgtgaatatagagaatctttgattacaagggagtttggttgaagttttacaataaccac |
100 |
Q |
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| T |
18975005 |
atagtccaatcttaattgaattactatcaatgttacgaatgcgtgaatatagagaatctttgattacaagggagtttggttgaagttttacaataaccac |
18975104 |
T |
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| Q |
101 |
tttcattgatagttcactatatggaccaatacttgtgaattgtccaaaatataaacgcaaccgatgttgtcgttcaaatcaaaagtttgcggttgggttt |
200 |
Q |
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| T |
18975105 |
tttcattgatagttcactatatggaccaatacttttgaattgtccgaaatataaacgcaatcgatgttgtcgttcaaatcaaaagtttgcggttgggttt |
18975204 |
T |
|
| Q |
201 |
tgagacacatatctgcattttcttatttttgttaaattaacaattatgaggtcactattttaaacactacaatgtagagaaccataaacttttaattatg |
300 |
Q |
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| T |
18975205 |
tgagacacatatctgcattttcttatttttgttaaattaacaattatga-gtgactattttaaacactacaatgtagagaaccgtaaacttttaattatg |
18975303 |
T |
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| Q |
301 |
aaagcttatgatcataacaggatcgagaagttggctccgaagaagatagaacaacatctcattgtatgttgatgatga |
378 |
Q |
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| T |
18975304 |
aaagcttatgatcataacaggatcgagaagttggctccgaagaagatagaacaacatctcattgtatgttgatgatga |
18975381 |
T |
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