View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19303_high_15 (Length: 386)
Name: NF19303_high_15
Description: NF19303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19303_high_15 |
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Alignment Details
Target: chr7 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 156 - 372
Target Start/End: Complemental strand, 4503627 - 4503411
Alignment:
| Q |
156 |
tattccagtaatgatacaacctgggttctctcaaaagattgttctttaattgaagttcattaatatcttgatctcaatcttagttgtaggtgtgaattca |
255 |
Q |
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| T |
4503627 |
tattccagtaatgatacaacttgggttctctcaaaagattgttctttaattgaatttcattaatatcttgatctcaatcttagttgtaggtgtgaattca |
4503528 |
T |
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| Q |
256 |
cttagctcacaaaacctaagataaatttaggtcaatcaatttgtgagtaactttataactatttaattcacgaatacatataaagtttgaaggggttatc |
355 |
Q |
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| T |
4503527 |
cttagctcataaaacctaagataaatttaggtcaatcaatatgtgagttactttataactatttaattcacgaatacatataaagtttgaaggggttatc |
4503428 |
T |
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| Q |
356 |
taatatagacccggtcc |
372 |
Q |
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| T |
4503427 |
taatatagacccggtcc |
4503411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 46 - 152
Target Start/End: Complemental strand, 4504014 - 4503903
Alignment:
| Q |
46 |
gtaggtgagtttaatatttgtggttattaacccttctcttctcaagnnnnnnn-----cacatgaaaatttgaaatttgtttggaggtacgattaaagtt |
140 |
Q |
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| T |
4504014 |
gtaggtgagtttaatatttgtggttattaacccttctgttctcaagaaaaaaaaaaaacacatgaaaatttgaaatttgtttggaggtacgattaaagtt |
4503915 |
T |
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| Q |
141 |
tgaccaatacgt |
152 |
Q |
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| T |
4503914 |
tgaccaatacgt |
4503903 |
T |
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