View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19303_high_20 (Length: 360)
Name: NF19303_high_20
Description: NF19303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19303_high_20 |
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Alignment Details
Target: chr6 (Bit Score: 314; Significance: 1e-177; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 18 - 355
Target Start/End: Original strand, 31114117 - 31114454
Alignment:
| Q |
18 |
acatgtaaggcttcactcgttgggtttattatgaacatcatccaaattttgatttatgtaagcttgtgttacattaaacaaatttcatgcattattgaat |
117 |
Q |
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| T |
31114117 |
acatgtaaggcttcactcgttgggtttattatgaacatcatccaaattttgattaatgtaagcttgtgttacattaaacaaatttcatgcattattgaat |
31114216 |
T |
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| Q |
118 |
acatacgacgctgatagaaaacaacaaaaattgagagaaaatatatcgtgtaggaggaacttcgcaaagctctatcattcttcttccacttcctcaagtt |
217 |
Q |
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| T |
31114217 |
acatacgacgctgatagaaaacaacaaaaattgggagaaaatatatcgtgtaggaggaacttcgcaaagctctatcattcttcttccacttcctcaagtt |
31114316 |
T |
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| Q |
218 |
caaacaaacaccactgacacggtggccgctgacagtagatactctcaacaacttctcccacccaaagcttcaaacaaacaggaaccaatggttcgttaaa |
317 |
Q |
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| T |
31114317 |
caaacaaacgccactgacacagtggccgctgacagtagatactctcaacaacttctcccacccaaagcttcaaacaaacaggaacaaatggttcgttaaa |
31114416 |
T |
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| Q |
318 |
aaattggcgacttgttttgcaagtaagagttatattat |
355 |
Q |
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| T |
31114417 |
aaattggtgacttgttttgcaagtaagagttatattat |
31114454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 248 - 301
Target Start/End: Original strand, 31088287 - 31088340
Alignment:
| Q |
248 |
gacagtagatactctcaacaacttctcccacccaaagcttcaaacaaacaggaa |
301 |
Q |
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| T |
31088287 |
gacagtagaaactctcgacaacttctcccaccgcaagcttcaaacaaacgggaa |
31088340 |
T |
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