View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19303_high_21 (Length: 349)
Name: NF19303_high_21
Description: NF19303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19303_high_21 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 16 - 349
Target Start/End: Complemental strand, 23209511 - 23209176
Alignment:
| Q |
16 |
agggaggtttagagtcacgaccccaccatgttattatccatttccacttttttgtactcacattcttgtcactttctacataccaaatagcattttgctt |
115 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| |
|
|
| T |
23209511 |
agggaggtttagagttacgaccccaccatgttattatccatttccacttttttgtactcacattcttgacaatttctacataccaaatagcattttgctt |
23209412 |
T |
|
| Q |
116 |
cttatcatacaa--acacacattcctaaaggtgcgcaccaaacaaaagtgaacttgagagggaaatctacatttatataaataaaaaatatcccgtcaat |
213 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
23209411 |
cttatcatacaataacacacattcctaaaggtgcgcaccaaacaaaagtgaacttgagagggaaatctacgtttatataaataaaaaatatcccgtcaat |
23209312 |
T |
|
| Q |
214 |
aaaaggtgatatatttgatctaaaattgatctaaatatatcaacttttgttgatcaaacattttcttatataagtaactcattgtgtcaaccgtggaaat |
313 |
Q |
| |
|
||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
23209311 |
aaaagttgatatatttgatctaaaattgatccaaatatatcaacttttgttgatcaaacattttcttatataagtaactcattgtgtcaatcgtggaaat |
23209212 |
T |
|
| Q |
314 |
gctagagtagaagatgacgatgatgataatgatgat |
349 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
23209211 |
gctagagtagaagatgacgatgatgataatgatgat |
23209176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University