View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19303_high_24 (Length: 312)
Name: NF19303_high_24
Description: NF19303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19303_high_24 |
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Alignment Details
Target: chr6 (Bit Score: 164; Significance: 1e-87; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 111 - 305
Target Start/End: Complemental strand, 31114667 - 31114472
Alignment:
| Q |
111 |
gtccatgaatcgtccaaagtgaacccagttcactgtgtttatgggatacaagcttctatcatcaatgcagataatggagagtgagtggcataatgggatc |
210 |
Q |
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| T |
31114667 |
gtccatgaatcgaccaaagtgaacccagttcactgtgtttctgggatacaagcttctatcatcaatgcagataatggagagtgagtggcataatgggacc |
31114568 |
T |
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| Q |
211 |
cacctctttgaatggacattggttct-aaagcttatttgattgggagaaaagacagaatgtgggtaaccatctcgtctaggaagttgttgatgatg |
305 |
Q |
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| T |
31114567 |
caactcttagaaaggacattggttctaaaagcttatttgattgggagaaaagacagaatgtgggtaaccatctcgtctaggaagttgttgatgatg |
31114472 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 31114723 - 31114681
Alignment:
| Q |
1 |
gatagataaagatgacgtcgttttgatgcttcaacccatttat |
43 |
Q |
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| T |
31114723 |
gatagataaagatgacgtcgttttgatgcttcaacccatttat |
31114681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 84 - 196
Target Start/End: Complemental strand, 31088611 - 31088499
Alignment:
| Q |
84 |
ttgagagtgggggttgaacataattgcgtccatgaatcgtccaaagtgaacccagttcactgtgtttatgggatacaagcttctatcatcaatgcagata |
183 |
Q |
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| T |
31088611 |
ttgagagtgtgggttgaacataattgtatccacgaatcaacgaaagtgaacccacttctctgtgtttctttgatagaagcttatatcatcaaagcggaca |
31088512 |
T |
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| Q |
184 |
atggagagtgagt |
196 |
Q |
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| T |
31088511 |
acagagagtgagt |
31088499 |
T |
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