View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19303_high_26 (Length: 302)
Name: NF19303_high_26
Description: NF19303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19303_high_26 |
 | |
|
| [»] scaffold0003 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 282
Target Start/End: Original strand, 38275205 - 38275486
Alignment:
| Q |
1 |
gggaatttgatgaaataaaagagaaccgaaaactataaccacatcatccattcttccttgaatcatctcagacatctcaattctaaaagcatgacagtga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38275205 |
gggaatttgatgaaataaaagagaaccgaaaactataaccacatcatccattcttccttgaatcatctcagacatctcaattctaaaagcatgacagtga |
38275304 |
T |
|
| Q |
101 |
acacacaaaatacattgacacctagagacgtggataacaaacatcttaccgactgttgagaaaataaatatatctttgataacgaaaggggggaaaatgc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38275305 |
acacacaaaatacattgacacctagagacgtggataacaaacatcttaccgactgttgagaaaataaatatatctttgataacgaaaggggggaaaatgc |
38275404 |
T |
|
| Q |
201 |
ataaaaattataaggataaggaaaaactcaccagctagaaattagagttatgaaatcaacaatttagttcgaaagataggag |
282 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38275405 |
ataaaaattataaggataaggaaaaactcaccagctagaaattagagttatgaaatcaacaatttagttcgaaagataggag |
38275486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 46 - 152
Target Start/End: Original strand, 36870449 - 36870555
Alignment:
| Q |
46 |
atccattcttccttgaatcatctcagacatctcaattctaaaagcatgacagtgaacacacaaaatacattgacacctagagacgtggataacaaacatc |
145 |
Q |
| |
|
||||||||||||||| ||||||||||| |||||| ||||||||||| |||| |||||| |||| |||||||||||||||||||| | |||||||||| |
|
|
| T |
36870449 |
atccattcttccttgcatcatctcagaattctcaaatctaaaagcataacagagaacacttgaaatgcattgacacctagagacgtgaagaacaaacatc |
36870548 |
T |
|
| Q |
146 |
ttaccga |
152 |
Q |
| |
|
||||||| |
|
|
| T |
36870549 |
ttaccga |
36870555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 206 - 267
Target Start/End: Complemental strand, 37962416 - 37962355
Alignment:
| Q |
206 |
aattataaggataaggaaaaactcaccagctagaaattagagttatgaaatcaacaatttag |
267 |
Q |
| |
|
||||| |||||||||| |||||||||||||||| |||||||||||| || ||||||||||| |
|
|
| T |
37962416 |
aattaaaaggataaggtaaaactcaccagctagcaattagagttatcaatccaacaatttag |
37962355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 206 - 269
Target Start/End: Complemental strand, 20455 - 20392
Alignment:
| Q |
206 |
aattataaggataaggaaaaactcaccagctagaaattagagttatgaaatcaacaatttagtt |
269 |
Q |
| |
|
||||| ||||||||| |||||||||||||||| ||||||||||||||| |||||||| |||| |
|
|
| T |
20455 |
aattaaaaggataagataaaactcaccagctagcaattagagttatgaatccaacaattcagtt |
20392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 206 - 269
Target Start/End: Complemental strand, 16430473 - 16430410
Alignment:
| Q |
206 |
aattataaggataaggaaaaactcaccagctagaaattagagttatgaaatcaacaatttagtt |
269 |
Q |
| |
|
||||| ||||||||| |||||||||||||||| ||||||||||||||| |||||||| |||| |
|
|
| T |
16430473 |
aattaaaaggataagataaaactcaccagctagcaattagagttatgaatccaacaattcagtt |
16430410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University