View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19303_high_3 (Length: 538)
Name: NF19303_high_3
Description: NF19303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19303_high_3 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-119; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 235 - 538
Target Start/End: Complemental strand, 50969034 - 50968731
Alignment:
| Q |
235 |
tggtgaagttcgccattgaagatggtcaacatacacgtggcagaaacggtctaaaaaataatctttagtagaattcatcattgaagatactcctgtcnnn |
334 |
Q |
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| T |
50969034 |
tggtgaagttcgccattgaagatggtcaacatgcacgtgccagaaacggtctaaaaaataatctttagtagaattcatcattgaagatactcctgtcaaa |
50968935 |
T |
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| Q |
335 |
nnnnnnnnnntcattaaagatactctaaatgcacatgttagaaacgtcgcatagatgcttgaaaatgatgtagttcaatgaggtcatcttt-ggtttgaa |
433 |
Q |
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| T |
50968934 |
aaataaaaaatcattaaagatactctaaatgcacatgtcagaaacgtcacataggtgcttgaaaatgatgtagttcaatgaggtcatcttttggtttgaa |
50968835 |
T |
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| Q |
434 |
aatgctttgagtgtacatgtgtcgcatacatacttttgggttccatgaagctatgaagtagcttaattttcgatgattggtagatcttcaatattgtaca |
533 |
Q |
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| T |
50968834 |
aatt-tttgagtgtacatgtgtcacatacatacttttgggttccatgaagctgtgaagtagcttaattttcgatgattggtagatcttcaatattgtaca |
50968736 |
T |
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| Q |
534 |
actaa |
538 |
Q |
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| T |
50968735 |
actaa |
50968731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 8 - 238
Target Start/End: Complemental strand, 50969295 - 50969062
Alignment:
| Q |
8 |
atatgagtacgctaacatgt-aattttaaaaggagagt-attttgccaaaatttttataggagtaggacaacttggagttactctgttctcccgaagcga |
105 |
Q |
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|||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50969295 |
atatgagtacgctaacatgttaattttaaaaggagagttattttgccaaattttttataggagtaggacaacttggagttactctgttctcccgaagcga |
50969196 |
T |
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| Q |
106 |
ctcatccttcacacttctcagtgttttttcttctgtaaatgaaatattaatatgtttggtaagctgtggaacctttttaaagattacaccatttgaataa |
205 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50969195 |
ctcatccttcacacttctcaatgttttttcttctgtaaatgaaatattaatatgtttggtaagctgtggaacctttttaaagattacaccatttgaataa |
50969096 |
T |
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| Q |
206 |
-aaaattgtacaagttgtttcaagatgacgtggt |
238 |
Q |
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| T |
50969095 |
aaaaattgtacaagttgtttcaagatgatgtggt |
50969062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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