View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19303_high_35 (Length: 238)
Name: NF19303_high_35
Description: NF19303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19303_high_35 |
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Alignment Details
Target: chr5 (Bit Score: 149; Significance: 8e-79; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 16 - 168
Target Start/End: Original strand, 31510477 - 31510629
Alignment:
| Q |
16 |
agaaatttcagtgaaagctcttgtttagttcctaaattagtggaaggtcttttttgtacgtaagattataagttgcatggaaaatctctcttcctgtttt |
115 |
Q |
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| T |
31510477 |
agaaatttcagtgaaagctcttgtttagttcctaaattagtggaaggtcttttttgtacgtatgattataagttgcatggaaaatctctcttcctgtttt |
31510576 |
T |
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| Q |
116 |
ctgatgaggaccttaacgagatccgtaaattgattagaggtaaatttatttat |
168 |
Q |
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| T |
31510577 |
ctgatgaggaccttaacgagatccgtaaattgattagaggtaaatttatttat |
31510629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 152 - 205
Target Start/End: Original strand, 31510653 - 31510706
Alignment:
| Q |
152 |
gaggtaaatttatttatatctatgttgtcattgttgtatacataatattttgat |
205 |
Q |
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| T |
31510653 |
gaggtaaatttatttatatctatgttgtcattgttgtatacataatattttgat |
31510706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 197 - 238
Target Start/End: Original strand, 31527664 - 31527705
Alignment:
| Q |
197 |
tattttgattcataatttcaggtttagttaacatatctattt |
238 |
Q |
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| T |
31527664 |
tattttgattcataatttcaggtttagttaacatatctattt |
31527705 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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