View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19303_high_8 (Length: 465)
Name: NF19303_high_8
Description: NF19303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19303_high_8 |
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Alignment Details
Target: chr2 (Bit Score: 401; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 1 - 448
Target Start/End: Original strand, 43275610 - 43276057
Alignment:
| Q |
1 |
taactttgatcatgctccaaatgtgcaaagtttccacttgaatcatttattcatgctccagatgtataagtgagggcagttctcaccttccaacccccaa |
100 |
Q |
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| T |
43275610 |
taactttgatcatgctccaaatgtgcaaagtttccacttgaatcatttattcatgctccagatgtataagtgagggcagttctcaccttccaacccccaa |
43275709 |
T |
|
| Q |
101 |
agtttaatagttgacaataagtaaaagaaaagagtagagagaaagaagcctaacctcaacaatttctcttgctctatccatattttgacataaagggata |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43275710 |
agtttaatagttgacaataagtaaaagaaaagagtagagagaaagaagcctaacctcaacaatttctcttgctctatccatattttgacataaagggata |
43275809 |
T |
|
| Q |
201 |
tcaaatttaaccatagcaagtccatttgtcctccaagtccttttaatttgattcacaacatcctgtgtaacaccagctttcttaaccttgacccaaatcc |
300 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43275810 |
tcaaatttaaccatagcaagttcatttgtcctccaagtccttttaatttgattcacaacatcctgtgtaacaccagctttcttaaccttgacccaaatcc |
43275909 |
T |
|
| Q |
301 |
tcattattgcagcctcactcctcaacctttgaagtaacaccttatcaagagtcaaatcggcagcagtgacaannnnnnnnnnnnncaccttcaaaaaatc |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
43275910 |
tcattattgcagcctcactcctcaacctttgaagtaacaccttatcaagagtcaaatcggcagcagtgacaattttttcctttttcaccttcaaaaaatc |
43276009 |
T |
|
| Q |
401 |
aaccttctcatgtctctcccatggcattctttcttttctcacaacctc |
448 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
43276010 |
aaccttctcatctctctcccatggcattctttcttttctcacaacctc |
43276057 |
T |
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