View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19303_low_11 (Length: 423)
Name: NF19303_low_11
Description: NF19303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19303_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 10 - 401
Target Start/End: Complemental strand, 19172666 - 19172275
Alignment:
| Q |
10 |
acatcatcatcttcatcatcgacgtcgcgtccattcaaagaatactacacagaatggttcaacacactcaagaacaatcacctcccattactccgtcgtt |
109 |
Q |
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| T |
19172666 |
acatcatcatcttcatcatcgacgtcgcgtccattcaaagaatactacacagaatggttcaacacactcaagaacaatcacctcccattactccgtcgtt |
19172567 |
T |
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| Q |
110 |
ctatctccggcgcctccttaaccctcctctcaactcacgttgagctcatccaccaacacttccaatcttactaccacaccctcgacgcagctgcaaccac |
209 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
19172566 |
ctatctccggcgactccttaaccctcctctcaactcacgttgagctcatccaccaacacttccaatcttactaccacaccctcgacgcagctgcaatcac |
19172467 |
T |
|
| Q |
210 |
agacccttctcaaatcctcaaccaagactggcataactccttagaaaagcctcttctttggatctctgacctccatcctttcatcttcaccaatcttgct |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19172466 |
agacccttctcaaatcctcaaccaagactggcataactccttagaaaagcctcttctttggatctctgacctccatcctttcatcttcaccaatcttgct |
19172367 |
T |
|
| Q |
310 |
cgttcttttcttgacgacgaagacaatgaaaccgaaaccaatgataattcatcggtttcaatgtcttctgatcgtccatggcaaatagccat |
401 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19172366 |
cgttcttttcttgacgacgaagacaatgaaaccgaaaccaatgataattcatcggtttcaatgtcttctgatcgtccatggcaaatagccat |
19172275 |
T |
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