View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19303_low_12 (Length: 421)
Name: NF19303_low_12
Description: NF19303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19303_low_12 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 396; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 14 - 421
Target Start/End: Original strand, 45339033 - 45339440
Alignment:
| Q |
14 |
caaaagagaatcgcgttgcagaaggccttcattctggactacgctataaaccgttgcgattcacaacataatggaaaccacttatgatttttatcttaca |
113 |
Q |
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| T |
45339033 |
caaaagagaatcgcgtcgcagaaggccttcattctggactacgctataaaccgttgcgattcacaacataatggaaaccacttatgatttttatcttaca |
45339132 |
T |
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| Q |
114 |
ctaagtggatgatcattcataaataacccgtataaataaattcgattataaaaccactttatggagttatgattttgatggaagaaattcatgtacagtg |
213 |
Q |
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| T |
45339133 |
ctaagtggatgatcattcataaataacccgtataaataaattcgattataaaaccactttatggagttatgattttgatggaagaaattcatgtacagtg |
45339232 |
T |
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| Q |
214 |
ctggagcaacaatacaattggtataaacaggagttgcttcacttttatagaatgaacacgtcaccggagtcacagtacagaaatgataggatgtggcaca |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45339233 |
ctggagcaacaatacaattggtataaacaggagttgcttcacttttatagaatgaacacgtcaccggagtcacagtacagaaatgataggatgtggcaca |
45339332 |
T |
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| Q |
314 |
ttacataatccgataaaccacataccatatcatttctcccaatgtgaacctatgtggcgatgatgagtcttgtctcccataggtggtgcaatctttggaa |
413 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
45339333 |
ttacataatccgataaaccacatactatatcatttctcccaatgtgaacctatgtggcaatgatgagtcttgtctcccataggtggtgcaatctttggaa |
45339432 |
T |
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| Q |
414 |
tcatcttc |
421 |
Q |
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| T |
45339433 |
tcatcttc |
45339440 |
T |
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