View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19303_low_17 (Length: 381)
Name: NF19303_low_17
Description: NF19303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19303_low_17 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 253; Significance: 1e-140; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 34 - 373
Target Start/End: Original strand, 8420549 - 8420876
Alignment:
| Q |
34 |
ttactccattcttatttccactcaatttattctacttatttgactatgagtgactccttttgttgctgagtcaaaacactactctcatattagtcacgtt |
133 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| ||||||| |
|
|
| T |
8420549 |
ttactccattcctatttccactcaatttattctacttatttgactatgagtgtctccttttgttgctgagtcaaaacactactctcctattaatcacgtt |
8420648 |
T |
|
| Q |
134 |
gctcttgtttacttattagcatgccttcctaaagataaggaatccaccctcaactacttcctatagttatagttatgctacgagtgatcgactcaattaa |
233 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| ||||||||||| |
|
|
| T |
8420649 |
gctgttgtttacttattagcatgccttcctaaagataaggaatcca-cctcaactacttcctatagttatagttatgctatgagt----gactcaattaa |
8420743 |
T |
|
| Q |
234 |
aataaacctagatttcatttctttattattctgattttgttcaagaaggacggttatttgtatatgtatctacctataataattttcttagggataacac |
333 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
8420744 |
aataaacctagttttcatttctttattattctgattttgttcaaaagggacggttatttgtatatgtatctacctataataattt-------gataacac |
8420836 |
T |
|
| Q |
334 |
acaattaggaagagactgagaacatttcctactctctgct |
373 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8420837 |
acaattaggaagagactgagaacatttcctactctctgct |
8420876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 187; Significance: 1e-101; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 34 - 244
Target Start/End: Complemental strand, 49171754 - 49171545
Alignment:
| Q |
34 |
ttactccattcttatttccactcaatttattctacttatttgactatgagtgactccttttgttgctgagtcaaaacactactctcatattagtcacgtt |
133 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| |
|
|
| T |
49171754 |
ttactccattcctatttccactcaatttattctacttatttgactatgagtgactccttttgttgctgagttaaaacactactctcctattagtcacgtt |
49171655 |
T |
|
| Q |
134 |
gctcttgtttacttattagcatgccttcctaaagataaggaatccaccctcaactacttcctatagttatagttatgctacgagtgatcgactcaattaa |
233 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49171654 |
gctcttatttacttattagcatgccttcctaaagataaggaatcca-cctcaactacttcctatagttatagttatgctacgagtgatcgactcaattaa |
49171556 |
T |
|
| Q |
234 |
aataaacctag |
244 |
Q |
| |
|
||||||||||| |
|
|
| T |
49171555 |
aataaacctag |
49171545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 251 - 373
Target Start/End: Complemental strand, 49171361 - 49171239
Alignment:
| Q |
251 |
tttctttattattctgattttgttcaagaaggacggttatttgtatatgtatctacctataataattttcttagggataacacacaattaggaagagact |
350 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49171361 |
tttctttattattctgattttgttcaagaaggacggttatttgtatatgtatctacctataataattttcttagggataacacacaattaggaagagact |
49171262 |
T |
|
| Q |
351 |
gagaacatttcctactctctgct |
373 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
49171261 |
gagaacatttcctactctctgct |
49171239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 61 - 373
Target Start/End: Complemental strand, 21492622 - 21492315
Alignment:
| Q |
61 |
tattctacttatttgactatgagtgactccttttgttgctgagtcaaaacactactctcatattagtcacgttgctcttgtttacttattagcatgcctt |
160 |
Q |
| |
|
||||||||||||||||| ||||||| | ||||||||||||||||||||||||||||||| | |||||||||||||| ||||||||||||||| ||||||| |
|
|
| T |
21492622 |
tattctacttatttgaccatgagtgtccccttttgttgctgagtcaaaacactactctcttgttagtcacgttgctgttgtttacttattagtatgcctt |
21492523 |
T |
|
| Q |
161 |
cctaaagataaggaatccacc--------ctcaactacttcctatagttatagttatgctacgagtgatcgactcaattaaaataaacctagatttcatt |
252 |
Q |
| |
|
||||||||||||||||||||| |||||||| ||| ||||||||||||| |||| | |||||||||||||||| ||| |||| || |
|
|
| T |
21492522 |
cctaaagataaggaatccacctcccatggttcaactacctcc------tatagttatgctatgagt----ggctcaattaaaataaacttagttttcttt |
21492433 |
T |
|
| Q |
253 |
tctttattattctga-ttttgttcaagaaggacggttatttgtatatgtatctacctataataattttcttagggataacacacaattaggaagagactg |
351 |
Q |
| |
|
|||||||| |||||| |||||||||||| || ||||| || || |||||| |||||||||||||| ||||||||||| |||||||||||||||| |
|
|
| T |
21492432 |
tctttatttttctgatttttgttcaagaggggcggttttt----catatatctagctataataattttcctagggataacatacaattaggaagagacca |
21492337 |
T |
|
| Q |
352 |
agaacatttcctactctctgct |
373 |
Q |
| |
|
| ||| ||||||||| |||||| |
|
|
| T |
21492336 |
ataacgtttcctactatctgct |
21492315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 228 - 305
Target Start/End: Original strand, 45232599 - 45232677
Alignment:
| Q |
228 |
aattaaaataaacctagatttcatttctttattatt-ctgattttgttcaagaaggacggttatttgtatatgtatcta |
305 |
Q |
| |
|
|||||||| |||| ||| |||| |||||||||| || |||||||||||||||| |||||||||| | |||| ||||||| |
|
|
| T |
45232599 |
aattaaaacaaacatagttttcttttctttatttttgctgattttgttcaagagggacggttatatatatacgtatcta |
45232677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 66 - 119
Target Start/End: Original strand, 8730253 - 8730306
Alignment:
| Q |
66 |
tacttatttgactatgagtgactccttttgttgctgagtcaaaacactactctc |
119 |
Q |
| |
|
||||||||||||||| |||| |||||||||||||||||||||||||||||| |
|
|
| T |
8730253 |
tacttatttgactatcagtgttctcttttgttgctgagtcaaaacactactctc |
8730306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 66 - 119
Target Start/End: Original strand, 9082140 - 9082193
Alignment:
| Q |
66 |
tacttatttgactatgagtgactccttttgttgctgagtcaaaacactactctc |
119 |
Q |
| |
|
||||||||||||||| |||| |||||||||||||||||||||||||||||| |
|
|
| T |
9082140 |
tacttatttgactatcagtgttctcttttgttgctgagtcaaaacactactctc |
9082193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University