View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19303_low_18 (Length: 366)
Name: NF19303_low_18
Description: NF19303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19303_low_18 |
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| [»] chr2 (7 HSPs) |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 354; Significance: 0; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 1 - 366
Target Start/End: Complemental strand, 42253977 - 42253612
Alignment:
| Q |
1 |
agatgagatatcaaatgttatagagaaacacacagaaattttgttatagaaaagccatattgattgtaacgaacctttcaattaaatctttgataggaac |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42253977 |
agatgagatatcaaatgttatagagaaacacacaaaaattttgttatagaaaagccatattgattgtaacgaacctttcaattaaatctttgataggaac |
42253878 |
T |
|
| Q |
101 |
tttagtaaacccttcaacgatcgactgtgagcacttcattatataaaagcgagaagctgtcctctctttgctctgggaatacacattgtaacttcccaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42253877 |
tttagtaaacccttcaacgatcgactgtgagcacttcattatataaaagcgagaagctgtcctctctttgctctgggaatacacattgtaacttcccaaa |
42253778 |
T |
|
| Q |
201 |
agcatcatatcaatactattgacacctattcacaaggaaaatatgaaatcactatataagaatcatattcgacttttatgagtcaaaaaatgcatgttaa |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42253777 |
agcatcatatcaatactattgacacctattcacaagggaaatatgaaatcgctatataagaatcatattcgacttttatgagtcaaaaaatgcatgttaa |
42253678 |
T |
|
| Q |
301 |
aagtctttactatacagaaaataacgaaaaacaaagcatgtcctgatatgaacctcaagatatata |
366 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42253677 |
aagtctttactatacagaaaataacgaaaaacaaagcatgtcctgatatgaacctcaagatatata |
42253612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 351
Target Start/End: Complemental strand, 42280137 - 42279786
Alignment:
| Q |
1 |
agatgagatatcaaatgttatagagaaacacacagaaattttgttatagaaaagccatattgattgtaacgaacctttcaattaaatctttgataggaac |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| |
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| T |
42280137 |
agatgagatatcaaatgttatagagaaacacacaaaaagtttgttatagaaaagccatatcgattgtaacaaacctttcaattaaatctttgataggaac |
42280038 |
T |
|
| Q |
101 |
tttagtaaacccttcaacgatcgactgtgagcacttcattatataaaagcgagaagctgtcctctctttgctctgggaatacacattgtaacttcccaaa |
200 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
42280037 |
tttagtaaacccttcaacaatcgactgtgagcacttcattatataaaagcgaaacgctgtcctctctttgctctgggaatacacagtgtaacttcccaaa |
42279938 |
T |
|
| Q |
201 |
agcatcatatcaatactattgacacctattcacaaggaaaatatgaaatcactatataagaatcatattcgacttttatgagtcaaaaaatgcatgttaa |
300 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||| ||||||||||||| | |||||||||||| ||||||| |||||||||||||||| |||||||| |
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| T |
42279937 |
agcatcatatcaataatattgacacctattcacaagggaaatatgaaatcattttataagaatcatgttcgactattatgagtcaaaaaatacatgttaa |
42279838 |
T |
|
| Q |
301 |
aagtctttactatacagaaaataacg-aaaaacaaagcatgtcctgatatga |
351 |
Q |
| |
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|| |||| |||||||||||||| | ||||||||||||||||||||||||| |
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| T |
42279837 |
aacaatttaatatacagaaaataaagaaaaaacaaagcatgtcctgatatga |
42279786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 5 - 351
Target Start/End: Complemental strand, 42259566 - 42259221
Alignment:
| Q |
5 |
gagatatcaaatgttatagagaaacacacagaaattttgttatagaaaagccatattgattgtaacgaacctttcaattaaatctttgataggaacttta |
104 |
Q |
| |
|
||||||||||||||| |||||||| ||||| || ||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
42259566 |
gagatatcaaatgttgtagagaaagacaca--aagtttgttatagaaaagccatatcgattgtaacaaacctttcaattaaatctttgataggaacttta |
42259469 |
T |
|
| Q |
105 |
gtaaacccttcaacgatcgactgtgagcacttcattatataaaagcgagaagctgtcctctctttgctctgggaatacacattgtaacttcccaaaagca |
204 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| | |||||||||||||||| |
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| T |
42259468 |
gtaaacccttcaacaatcgactgtgagcacttcattatataaaagcgagaagctgccctctccttgctctgggaatacactgtataacttcccaaaagca |
42259369 |
T |
|
| Q |
205 |
tcatatcaatactattgacacctattcacaaggaaaatatgaaatcactatataagaatcatattcgacttttatgagtcaaaaaatgcatgttaaaagt |
304 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| ||||||| ||||||||||||||||||||||||||| |
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| T |
42259368 |
tcatatcaatactattgacacctattcacaagggaaatatgaaatcattatataagaatcatgttcgactattatgagtcaaaaaatgcatgttaaaaca |
42259269 |
T |
|
| Q |
305 |
ctttactatacagaaaataacg-aaaaacaaagcatgtcctgatatga |
351 |
Q |
| |
|
|||| |||||||||||||| | ||||||||||||||||||||||||| |
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| T |
42259268 |
atttaatatacagaaaataaagaaaaaacaaagcatgtcctgatatga |
42259221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 302
Target Start/End: Complemental strand, 42268114 - 42267813
Alignment:
| Q |
1 |
agatgagatatcaaatgttatagagaaacacacagaaattttgttatagaaaagccatattgattgtaacgaacctttcaattaaatctttgataggaac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||| ||||| |||||||||| |||| ||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
42268114 |
agatgagatatcaaatgttatagagaaacacacaaaaagtttgtcatagaaaagcgatatcgattgtagcgaacctttcaattaaatctttgataggaac |
42268015 |
T |
|
| Q |
101 |
tttagtaaacccttcaacgatcgactgtgagcacttcattatataaaagcgagaagctgtcctctctttgctctgggaatacacattgtaacttcccaaa |
200 |
Q |
| |
|
|| ||||||||||||| |||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| |
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| T |
42268014 |
ttgagtaaacccttcatcgatggactgtgagcccttcattatataaaagcgagaagctgtcctctctttgctctgggaatgcacagtgtaacttcccaaa |
42267915 |
T |
|
| Q |
201 |
agcatcatatcaatactattgacacctattcacaaggaaaatatgaaatcactatataagaatcatattcgacttttatgagtcaaaaaatgcatgttaa |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||| || ||||||||||| ||| ||| ||||||||||||||||||||||||| |
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| T |
42267914 |
agcatcatatcaatactattgacacctattcacaagggaaatatgaaatcattacataagaatcatgttcaactattatgagtcaaaaaatgcatgttaa |
42267815 |
T |
|
| Q |
301 |
aa |
302 |
Q |
| |
|
|| |
|
|
| T |
42267814 |
aa |
42267813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 63 - 249
Target Start/End: Complemental strand, 42307706 - 42307520
Alignment:
| Q |
63 |
attgtaacgaacctttcaattaaatctttgataggaactttagtaaacccttcaacgatcgactgtgagcacttcattatataaaagcgagaagctgtcc |
162 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| |||| |||| |
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|
| T |
42307706 |
attgtaacgaacctttcaattaaatctttgataggaacttgagtaaacccttcatcgatcgactgtgagcacttcattatataaaagcgtgaagatgtct |
42307607 |
T |
|
| Q |
163 |
tctctttgctctgggaatacacattgtaacttcccaaaagcatcatatcaatactattgacacctattcacaaggaaaatatgaaat |
249 |
Q |
| |
|
||||||||||||||||||||||| |||||||| |||||||||| ||||| ||||||||||||||| |||| |||| ||||| ||||| |
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|
| T |
42307606 |
tctctttgctctgggaatacacagtgtaactttccaaaagcataatatcgatactattgacacctgttcataagggaaataagaaat |
42307520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 67 - 227
Target Start/End: Complemental strand, 42312477 - 42312317
Alignment:
| Q |
67 |
taacgaacctttcaattaaatctttgataggaactttagtaaacccttcaacgatcgactgtgagcacttcattatataaaagcgagaagctgtcctctc |
166 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| | || |||| ||| | ||||||||||||||||||||||||||||||| ||||||||| |||| |
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|
| T |
42312477 |
taacgaacctttcaattaaatctttgataggaacttgaatagacccatcagctgtcgactgtgagcacttcattatataaaagcgtgaagctgtcttctc |
42312378 |
T |
|
| Q |
167 |
tttgctctgggaatacacattgtaacttcccaaaagcatcatatcaatactattgacacct |
227 |
Q |
| |
|
||||| ||||||||||||| |||||||| |||||||||| |||||| |||||||||||||| |
|
|
| T |
42312377 |
tttgcgctgggaatacacagtgtaactttccaaaagcataatatcattactattgacacct |
42312317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 308 - 366
Target Start/End: Complemental strand, 42307391 - 42307333
Alignment:
| Q |
308 |
tactatacagaaaataacgaaaaacaaagcatgtcctgatatgaacctcaagatatata |
366 |
Q |
| |
|
||||||||||||||||| ||| ||||||| |||| ||||||| |||||||| ||||||| |
|
|
| T |
42307391 |
tactatacagaaaataaggaagaacaaagtatgttctgatattaacctcaaaatatata |
42307333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 5 - 351
Target Start/End: Complemental strand, 488401 - 488056
Alignment:
| Q |
5 |
gagatatcaaatgttatagagaaacacacagaaattttgttatagaaaagccatattgattgtaacgaacctttcaattaaatctttgataggaacttta |
104 |
Q |
| |
|
||||||||||||||| |||||||| ||||| || ||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
488401 |
gagatatcaaatgttgtagagaaagacaca--aagtttgttatagaaaagccatatcgattgtaacaaacctttcaattaaatctttgataggaacttta |
488304 |
T |
|
| Q |
105 |
gtaaacccttcaacgatcgactgtgagcacttcattatataaaagcgagaagctgtcctctctttgctctgggaatacacattgtaacttcccaaaagca |
204 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| | |||||||||||||||| |
|
|
| T |
488303 |
gtaaacccttcaacaatcgactgtgagcacttcattatataaaagcgagaagctgccctctccttgctctgggaatacactgtataacttcccaaaagca |
488204 |
T |
|
| Q |
205 |
tcatatcaatactattgacacctattcacaaggaaaatatgaaatcactatataagaatcatattcgacttttatgagtcaaaaaatgcatgttaaaagt |
304 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| ||||||| ||||||||||||||||||||||||||| |
|
|
| T |
488203 |
tcatatcaatactattgacacctattcacaagggaaatatgaaatcattatataagaatcatgttcgactattatgagtcaaaaaatgcatgttaaaaca |
488104 |
T |
|
| Q |
305 |
ctttactatacagaaaataacg-aaaaacaaagcatgtcctgatatga |
351 |
Q |
| |
|
|||| |||||||||||||| | ||||||||||||||||||||||||| |
|
|
| T |
488103 |
atttaatatacagaaaataaagaaaaaacaaagcatgtcctgatatga |
488056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 72 - 212
Target Start/End: Complemental strand, 25278865 - 25278725
Alignment:
| Q |
72 |
aacctttcaattaaatctttgataggaactttagtaaacccttcaacgatcgactgtgagcacttcattatataaaagcgagaagctgtcctctctttgc |
171 |
Q |
| |
|
||||||||||| | |||||||| ||||||||| ||| | | | | ||| ||||| ||||||| |||||||||||||||||||||| | ||||||||| |
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|
| T |
25278865 |
aacctttcaataacatctttgaggggaactttaataacctcctgattgattgactgggagcactgcattatataaaagcgagaagcttccttctctttgc |
25278766 |
T |
|
| Q |
172 |
tctgggaatacacattgtaacttcccaaaagcatcatatca |
212 |
Q |
| |
|
| || ||||| | | |||| |||||||||||||| |||||| |
|
|
| T |
25278765 |
tttgagaatagatagtgtagcttcccaaaagcataatatca |
25278725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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