View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19303_low_19 (Length: 364)
Name: NF19303_low_19
Description: NF19303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19303_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 18 - 354
Target Start/End: Complemental strand, 52033373 - 52033036
Alignment:
| Q |
18 |
gcaccaccctcttttctccttacaagattgcaaacttcaacttttctcataggtattaacacttttcacttgttttcgttctctatttttgtggttgact |
117 |
Q |
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| T |
52033373 |
gcaccaccctcttttctccttacaagattgcaaacttcaacttttctcataggtattaacacttttcccttgttttcgttctctatttttgtggttgact |
52033274 |
T |
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| Q |
118 |
attatctgatgtgggtatggtattggagtgcagggtggtgttggcacctatgaccagatgcagagcgttgaatggtattccaaacgcagcgcttgctgaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52033273 |
attatctgatgtgggtatggtattggagtgcagggtggtgttggcacctatgaccagatgcagagcgttgaatggtattccaaacgcagcgcttgctgaa |
52033174 |
T |
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| Q |
218 |
tactactctcaaagatcaactccaggtggatttctcatcagtgaaggaacctccatctctcccactgcttatgggtatataattcctcttttcttttata |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52033173 |
tactactctcaaagatcaactccaggtggatttctcatcagtgaaggaacctccatctctcccactgcttatgggtatataattcctcttttcttttata |
52033074 |
T |
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| Q |
318 |
-tattttgtgttacaaaacctaatttatattcattcat |
354 |
Q |
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| T |
52033073 |
tttttttgtgttacaaaacctaatttatattcattcat |
52033036 |
T |
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