View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19303_low_2 (Length: 571)
Name: NF19303_low_2
Description: NF19303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19303_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 424; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 61 - 555
Target Start/End: Original strand, 4931237 - 4931732
Alignment:
| Q |
61 |
accgtgattttacagaaactacaaagtttagtttttgaaaagtcaaggtagatcgctatcactctgacatactcaccgtaatacgaatcatacgctaagc |
160 |
Q |
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| T |
4931237 |
accgtgattttacggaaactacaaagtgtagtttttgaaaagtcactgtagatcgctgtcactctgacatactcaccgtaatacgaatcatacgctaagc |
4931336 |
T |
|
| Q |
161 |
ttagtttaatatcactgcaatgaatcacttcatgttactttgtggactcaaattatgtgcaactttgttgtcgctgcattttagaaaataatcgtttgat |
260 |
Q |
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|| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
4931337 |
ttggtttaatatcactgcaatgaatcacttcctgttactttgtggactcaaattatgtgcaactttgttgtcgctgcattttaaaaaataatcgtttgat |
4931436 |
T |
|
| Q |
261 |
gaagatcatacttttcatattttatcaagtttaaaataaaaattcgaagatgcaaatcacatggactatctaaatctctacattgtcctctttttggaca |
360 |
Q |
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| T |
4931437 |
gaagatcatacttttcatattttatcaagtttaaaataaaaattcgaagatgcaaatcacatggactatctaaatctctacattgtcctctttttggaca |
4931536 |
T |
|
| Q |
361 |
aaaaatgcatatgatagtttgagggaatataaaataag-nnnnnnnntgatcatattcacacttcgatgcaaatctatctatatcatctgaaggatatgg |
459 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
4931537 |
aaaaatgcatatgatagtttgagggaatataaaataagaaaaaaaaatgatcgtattcacacttcaatgcaaatctatctatatcatctgaaggatatgg |
4931636 |
T |
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| Q |
460 |
aatatacatcacatatttcacctttcaccctttcaacattacaatcatttacttatcaatcatttacaccatacgcccatgccgaagcctccacag |
555 |
Q |
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| T |
4931637 |
aatatacatcacatatttcacctttcaccctttcaacattacaatcatttacttatcaatcatttacaccatacgcccatgccgaagcctccacag |
4931732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 45 - 114
Target Start/End: Original strand, 5173785 - 5173854
Alignment:
| Q |
45 |
agaatcacggtgacctaccgtgattttacagaaactacaaagtttagtttttgaaaagtcaaggtagatc |
114 |
Q |
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||||||||||||| ||||||||||||||||||| ||||||| | ||| |||| |||| ||| |||||||| |
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| T |
5173785 |
agaatcacggtgatctaccgtgattttacagaagctacaaaatgtagatttttaaaaatcacggtagatc |
5173854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 69 - 101
Target Start/End: Original strand, 9436122 - 9436154
Alignment:
| Q |
69 |
tttacagaaactacaaagtttagtttttgaaaa |
101 |
Q |
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| T |
9436122 |
tttacagaaactacaaagtgtagtttttgaaaa |
9436154 |
T |
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