View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19303_low_22 (Length: 338)
Name: NF19303_low_22
Description: NF19303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19303_low_22 |
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Alignment Details
Target: chr8 (Bit Score: 158; Significance: 5e-84; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 23381900 - 23381651
Alignment:
| Q |
1 |
accaaatgaaaatggaaaattattcttctgacaattgacacaatcactctaacatcattcaacataaacc--caattgc-tctttgaaagatatatttct |
97 |
Q |
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| T |
23381900 |
accaaatgaaaatggaaaattattcttctgacaattgacacaatgacactaaca--attgttcttcaaccaacaatcaaatcattcaaacatatatttct |
23381803 |
T |
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| Q |
98 |
gattttattattttattacacagtcattccatttctgattgcatttgtcatatttgatatattgccaaaagtagcaatttaaaaacacgttgctttgaat |
197 |
Q |
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| T |
23381802 |
gattttattattttagtacacagtcattccatttctgattgcatttgtcatatttgatatgttaccaaaagtagcaatttaaaaacacgttgctttgaat |
23381703 |
T |
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| Q |
198 |
atacatgtcacatgtgtgatagtaataatgtatattttcagaatcttacata |
249 |
Q |
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| T |
23381702 |
atacatgtcacatgtgtgatagtaataatgtatattttcagaatcttacata |
23381651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 88 - 249
Target Start/End: Original strand, 23347405 - 23347564
Alignment:
| Q |
88 |
atatatttctgattttattattttattacacagtcattccatttctgattgcatttgtcatatttgatatattgccaaaagtagcaatttaaaaacacgt |
187 |
Q |
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| T |
23347405 |
atatatttctgattttattattttagtacacagtcattccatttctgattgcatttgtcat--ttgatatattgccaaaagtagaaatttaaaaacacgt |
23347502 |
T |
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| Q |
188 |
tgctttgaatatacatgtcacatgtgtgatagtaataatgtatattttcagaatcttacata |
249 |
Q |
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| T |
23347503 |
tgctttgaatatacatgtcacatgtgtgatagtaataatgtatattttcagaatcttacata |
23347564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 23345102 - 23345170
Alignment:
| Q |
1 |
accaaatgaaaatggaaaattattcttctgacaattgacacaatcactctaacatcattcaacataaac |
69 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| |||| |
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| T |
23345102 |
accaaatgaaaatggaaaattattcttctgacaattgacacaatgacactaacatcattcaacagaaac |
23345170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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