View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19303_low_30 (Length: 264)

Name: NF19303_low_30
Description: NF19303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19303_low_30
NF19303_low_30
[»] chr2 (6 HSPs)
chr2 (1-252)||(43275372-43275623)
chr2 (107-189)||(12481531-12481614)
chr2 (57-187)||(11064473-11064604)
chr2 (83-188)||(12931512-12931618)
chr2 (52-188)||(5137207-5137344)
chr2 (57-122)||(37253242-37253307)
[»] chr7 (4 HSPs)
chr7 (52-124)||(39079903-39079975)
chr7 (52-129)||(16015683-16015759)
chr7 (23-165)||(26239862-26240006)
chr7 (103-163)||(42968195-42968255)
[»] chr5 (7 HSPs)
chr5 (44-160)||(32337501-32337616)
chr5 (33-114)||(5091054-5091135)
chr5 (57-114)||(15844492-15844549)
chr5 (63-165)||(37656924-37657027)
chr5 (104-150)||(6787776-6787822)
chr5 (83-129)||(31973143-31973189)
chr5 (192-252)||(39156654-39156714)
[»] chr8 (4 HSPs)
chr8 (22-188)||(31197586-31197752)
chr8 (57-129)||(30590513-30590585)
chr8 (83-155)||(30966075-30966147)
chr8 (83-188)||(45031369-45031474)
[»] chr4 (4 HSPs)
chr4 (57-123)||(17912812-17912878)
chr4 (217-252)||(22237806-22237841)
chr4 (85-159)||(25602260-25602336)
chr4 (67-134)||(55253342-55253409)
[»] chr1 (10 HSPs)
chr1 (46-124)||(19810967-19811045)
chr1 (47-124)||(41590497-41590573)
chr1 (67-159)||(347078-347170)
chr1 (74-148)||(31293953-31294027)
chr1 (57-129)||(40571592-40571663)
chr1 (77-131)||(19809945-19809999)
chr1 (89-191)||(43480341-43480443)
chr1 (218-250)||(1255181-1255213)
chr1 (108-188)||(38668331-38668411)
chr1 (52-100)||(40188669-40188717)
[»] chr6 (2 HSPs)
chr6 (143-191)||(466317-466365)
chr6 (87-191)||(16570127-16570231)
[»] chr3 (2 HSPs)
chr3 (107-191)||(30179740-30179824)
chr3 (58-114)||(54861605-54861661)


Alignment Details
Target: chr2 (Bit Score: 248; Significance: 1e-138; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 43275623 - 43275372
Alignment:
Q  1 catgatcaaagttacttgattgcggaaagctgatagtagatggcccaacatatctcggataggctctgataccatattaaactttgggttgggactaact 100  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43275623 catgatcaaagttacttgatcgcggaaagctgatagtagatggcccaacatatctcggataggctctgataccatattaaactttgggttgggactaact 43275524  T
Q  101 gaaccttacaaaaccgacttgtaacgtgaagactaccctcacatataaacacattttcagaccattactcatctaatgtgggactctttaaaaccaattg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43275523 gaaccttacaaaaccgacttgtaacgtgaagactaccctcacatataaacacattttcagaccattactcatctaatgtgggactctttaaaaccaattg 43275424  T
Q  201 caaaccagcatttgtgtgacttttaaggtagatatgattaacgtcaaatatt 252  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43275423 caaaccagcatttgtgtgacttttaaggtagatatgattaacgtcaaatatt 43275372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 107 - 189
Target Start/End: Complemental strand, 12481614 - 12481531
Alignment:
Q  107 tacaaaaccgacttgtaacgtgaagactaccct-cacatataaacacattttcagaccattactcatctaatgtgggactcttt 189  Q
    |||||||||| ||||||| |||| ||||||||| ||||||| ||||||||||||| ||||  ||||||| | ||||||||||||    
T  12481614 tacaaaaccggcttgtaaggtgaggactacccttcacatatgaacacattttcaggccatatctcatctgaagtgggactcttt 12481531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 57 - 187
Target Start/End: Original strand, 11064473 - 11064604
Alignment:
Q  57 ggataggctctgataccatattaaactttgggttgggactaactgaacc-ttacaaaaccgacttgtaacgtgaagactaccctcacatataaacacatt 155  Q
    |||||||||| |||||||||||| | |||||||||   |||||| |||| ||  ||||| | ||||||| ||||||||||| | ||| |||| ||||||     
T  11064473 ggataggctccgataccatattagaatttgggttgcacctaactcaacccttggaaaactggcttgtaaggtgaagactactcccacttatagacacatc 11064572  T
Q  156 ttcagaccattactcatctaatgtgggactct 187  Q
    ||||  ||||  |||||| |||||||||||||    
T  11064573 ttcatgccatatctcatccaatgtgggactct 11064604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 188
Target Start/End: Complemental strand, 12931618 - 12931512
Alignment:
Q  83 tttgggttgggactaactgaaccttacaaaaccgacttgtaacgtgaagactaccc-tcacatataaacacattttcagaccattactcatctaatgtgg 181  Q
    |||||||||||  ||| | | |||| |||||| | ||||||| |||| |||||||  ||||||||||||||||| || ||||||  |||||| ||||||     
T  12931618 tttgggttgggtttaattcatccttgcaaaactggcttgtaaggtgaggactacctgtcacatataaacacattgtctgaccatatctcatccaatgtga 12931519  T
Q  182 gactctt 188  Q
    |||||||    
T  12931518 gactctt 12931512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 52 - 188
Target Start/End: Complemental strand, 5137344 - 5137207
Alignment:
Q  52 atctcggataggctctgataccatattaaactttgggttgggactaa-ctgaaccttacaaaaccgacttgtaacgtgaagactaccctcacatataaac 150  Q
    |||| ||||| ||||| ||||||| ||| | |||||||||   |||| || || |||||||||  | ||||||| ||||||||||| | ||| ||||||     
T  5137344 atcttggataagctctaataccatcttagaatttgggttgtccctaaactcaaacttacaaaattggcttgtaaggtgaagactactcccacttataaat 5137245  T
Q  151 acattttcagaccattactcatctaatgtgggactctt 188  Q
    ||||| |||| ||||  |||||||||  ||||||||||    
T  5137244 acattgtcaggccatatctcatctaacatgggactctt 5137207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 57 - 122
Target Start/End: Original strand, 37253242 - 37253307
Alignment:
Q  57 ggataggctctgataccatattaaactttgggttgggactaactgaaccttacaaaaccgacttgt 122  Q
    |||||| || |||||| || ||| | ||||||||||  |||||||||||||||||||||| |||||    
T  37253242 ggatagcctatgatacaatcttatagtttgggttggacctaactgaaccttacaaaaccggcttgt 37253307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 52 - 124
Target Start/End: Original strand, 39079903 - 39079975
Alignment:
Q  52 atctcggataggctctgataccatattaaactttgggttgggactaactgaaccttacaaaaccgacttgtaa 124  Q
    |||| |||||||||||||| |||| ||||| ||||||||||| |||||| ||||||||||||||| |||||||    
T  39079903 atctaggataggctctgatgccatcttaaaatttgggttgggcctaactaaaccttacaaaaccggcttgtaa 39079975  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 52 - 129
Target Start/End: Original strand, 16015683 - 16015759
Alignment:
Q  52 atctcggataggctctgataccatattaaactttgggttgggactaactgaaccttacaaaaccgacttgtaacgtga 129  Q
    |||| ||||||||||| ||| ||| ||||| ||| | ||||| |||||| |||||||| |||||||||||||| ||||    
T  16015683 atctaggataggctctaatatcatcttaaaattttgattgggcctaactcaaccttac-aaaccgacttgtaaggtga 16015759  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 165
Target Start/End: Original strand, 26239862 - 26240006
Alignment:
Q  23 cggaaagctgatagtagatggcccaacatatctcggat-aggctctgataccatattaaactttg-ggttgggactaactgaaccttacaaaaccgactt 120  Q
    |||||| ||||||| || |||||||||  |||| |||  ||||||||||||||| ||| |  ||| ||||||| |||||  ||||  |||| ||||||||    
T  26239862 cggaaacctgatagcaggtggcccaacggatcttggaggaggctctgataccatcttagaaattgtggttgggtctaacacaaccccacaataccgactt 26239961  T
Q  121 gtaacgtgaagactaccctcacatataaacacattttcagaccat 165  Q
    || | |||| || | ||| ||| |||||||||||| |||||||||    
T  26239962 gtgaggtgaggattgcccccacttataaacacattgtcagaccat 26240006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 103 - 163
Target Start/End: Original strand, 42968195 - 42968255
Alignment:
Q  103 accttacaaaaccgacttgtaacgtgaagactaccctcacatataaacacattttcagacc 163  Q
    ||||||||||||||||||||||  |||||| | | ||||| ||||||| ||| ||||||||    
T  42968195 accttacaaaaccgacttgtaagctgaagattgcactcacttataaacccatgttcagacc 42968255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 44 - 160
Target Start/End: Complemental strand, 32337616 - 32337501
Alignment:
Q  44 cccaacatatctcggataggctctgataccatattaaactttgggttgggactaactgaaccttacaaaaccgacttgtaacgtgaagactaccctcaca 143  Q
    |||| ||||||| ||||||| ||||||||||||||| | ||||||||||| ||||   |||| |||||||||| |||||| ||||| |||||||| | |     
T  32337616 cccagcatatcttggataggatctgataccatattagaatttgggttgggcctaatacaaccctacaaaaccggcttgtagcgtgaggactacccac-cc 32337518  T
Q  144 tataaacacattttcag 160  Q
    ||||| |||||||||||    
T  32337517 tataagcacattttcag 32337501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 33 - 114
Target Start/End: Original strand, 5091054 - 5091135
Alignment:
Q  33 atagtagatggcccaacatatctcggataggctctgataccatattaaactttgggttgggactaactgaaccttacaaaac 114  Q
    ||||||| ||||||||   |||| ||||| |||||||||||||||||||||| | |||| | |||| | |||||||||||||    
T  5091054 atagtaggtggcccaatggatcttggatatgctctgataccatattaaacttggtgttgagcctaaatcaaccttacaaaac 5091135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 57 - 114
Target Start/End: Original strand, 15844492 - 15844549
Alignment:
Q  57 ggataggctctgataccatattaaactttgggttgggactaactgaaccttacaaaac 114  Q
    ||||||||||||| ||||| ||||| ||||||||||| |||||| || ||||||||||    
T  15844492 ggataggctctgacaccatcttaaaatttgggttgggcctaactcaatcttacaaaac 15844549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 63 - 165
Target Start/End: Original strand, 37656924 - 37657027
Alignment:
Q  63 gctctgataccatattaaactttg-ggttgggactaactgaaccttacaaaaccgacttgtaacgtgaagactaccctcacatataaacacattttcaga 161  Q
    ||||||||||||| ||| || | | ||||||| |||||| ||||  ||||||||||||||| | || | || ||||| ||| |||||||||||| |||||    
T  37656924 gctctgataccatgttagacatggtggttgggcctaacttaaccccacaaaaccgacttgtgaggtaaggattacccccacttataaacacattgtcaga 37657023  T
Q  162 ccat 165  Q
    ||||    
T  37657024 ccat 37657027  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 150
Target Start/End: Complemental strand, 6787822 - 6787776
Alignment:
Q  104 ccttacaaaaccgacttgtaacgtgaagactaccctcacatataaac 150  Q
    ||||||||||||||||||||| ||||||| | ||||||| |||||||    
T  6787822 ccttacaaaaccgacttgtaaagtgaagatttccctcacttataaac 6787776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 129
Target Start/End: Original strand, 31973143 - 31973189
Alignment:
Q  83 tttgggttgggactaactgaaccttacaaaaccgacttgtaacgtga 129  Q
    ||||||||||| |||||||||||||||||||||| | ||||| ||||    
T  31973143 tttgggttgggcctaactgaaccttacaaaaccggcatgtaaggtga 31973189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 252
Target Start/End: Original strand, 39156654 - 39156714
Alignment:
Q  192 aaccaattgcaaaccagcatttgtgtgacttttaaggtagatatgattaacgtcaaatatt 252  Q
    |||||||  ||||||| ||||||| ||||||||||||||  ||||||| | ||||||||||    
T  39156654 aaccaatcacaaaccatcatttgtatgacttttaaggtatgtatgattgaagtcaaatatt 39156714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 22 - 188
Target Start/End: Complemental strand, 31197752 - 31197586
Alignment:
Q  22 gcggaaagctgatagtagatggcccaacatatctcggataggctctgataccatattaaactttgggttgggactaactgaaccttacaaaaccgacttg 121  Q
    ||||||| ||||||| || ||||||||   |||||||| ||||||||||||||| ||| |  |  ||||||| |||||  |||| ||||||||||||||     
T  31197752 gcggaaacctgatagcaggtggcccaatggatctcggagaggctctgataccatcttagaaatctggttgggcctaacacaaccctacaaaaccgacttt 31197653  T
Q  122 taacgtgaagactaccctcacatataaacacattttcagaccattactcatctaatgtgggactctt 188  Q
    | | ||||  | |||||| || |||||||||||| ||||||||| ||  |||| |||| ||||||||    
T  31197652 tgaggtgagaattacccttacttataaacacattgtcagaccatcacctatctgatgtaggactctt 31197586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 57 - 129
Target Start/End: Complemental strand, 30590585 - 30590513
Alignment:
Q  57 ggataggctctgataccatattaaactttgggttgggactaactgaaccttacaaaaccgacttgtaacgtga 129  Q
    ||||||||| ||||||||||||| | |||||| | || |||| | ||||||||||||||| ||||||| ||||    
T  30590585 ggataggctttgataccatattagaatttgggctaggcctaagtcaaccttacaaaaccggcttgtaaggtga 30590513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 83 - 155
Target Start/End: Original strand, 30966075 - 30966147
Alignment:
Q  83 tttgggttgggactaactgaaccttacaaaaccgacttgtaacgtgaagactaccctcacatataaacacatt 155  Q
    ||||||||||| |||||| ||  ||||||||||| ||||||| |||| |||| ||| ||| ||||||||||||    
T  30966075 tttgggttgggcctaactcaaatttacaaaaccggcttgtaaggtgaggactgcccccacttataaacacatt 30966147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 83 - 188
Target Start/End: Original strand, 45031369 - 45031474
Alignment:
Q  83 tttgggttgggactaactgaaccttacaaaaccgacttgtaacgtgaagactaccctcacatataaacacattttcagaccattactcatctaatgtggg 182  Q
    ||||||||||| |||||  ||||||||||||||| ||||||| |||| || | |||  || |||||||| || |||| | |||  |||||| |||| |||    
T  45031369 tttgggttgggcctaacacaaccttacaaaaccggcttgtaaggtgaggattgccccgacttataaacatatgttcatatcatctctcatccaatggggg 45031468  T
Q  183 actctt 188  Q
    ||||||    
T  45031469 actctt 45031474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 57 - 123
Target Start/End: Complemental strand, 17912878 - 17912812
Alignment:
Q  57 ggataggctctgataccatattaaactttgggttgggactaactgaaccttacaaaaccgacttgta 123  Q
    ||||||||||| ||||||| ||||| ||||||||||| |||||| |||| |||||||||| ||||||    
T  17912878 ggataggctctcataccatcttaaaatttgggttgggcctaactcaaccctacaaaaccggcttgta 17912812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 217 - 252
Target Start/End: Original strand, 22237806 - 22237841
Alignment:
Q  217 tgacttttaaggtagatatgattaacgtcaaatatt 252  Q
    ||||||||||||||||||||||||| ||||||||||    
T  22237806 tgacttttaaggtagatatgattaaagtcaaatatt 22237841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 85 - 159
Target Start/End: Complemental strand, 25602336 - 25602260
Alignment:
Q  85 tgggttgggactaactgaacct-tacaaaaccgacttgtaacgtgaagactacc-ctcacatataaacacattttca 159  Q
    ||||||||| |||||  ||||| |||||||||  ||||||| |||| ||||||| ||||| ||||||||||||||||    
T  25602336 tgggttgggcctaacacaacctctacaaaaccaccttgtaaagtgaggactacctctcacttataaacacattttca 25602260  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 134
Target Start/End: Complemental strand, 55253409 - 55253342
Alignment:
Q  67 tgataccatatta-aactttgggttgggactaactgaaccttacaaaaccgacttgtaacgtgaagact 134  Q
    ||||||||||||| || ||||| ||| | |||||| ||||||||||||||||||||||| |||| ||||    
T  55253409 tgataccatattagaattttggcttgag-ctaactcaaccttacaaaaccgacttgtaaggtgaggact 55253342  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 46 - 124
Target Start/End: Original strand, 19810967 - 19811045
Alignment:
Q  46 caacatatctcggataggctctgataccatattaaactttgggttgggactaactgaaccttacaaaaccgacttgtaa 124  Q
    ||||| |||| |||||| |||||||||||| ||||| |||||||| || |||| | ||||||||||||||| |||||||    
T  19810967 caacagatctaggatagtctctgataccatcttaaaatttgggttcggcctaagtcaaccttacaaaaccggcttgtaa 19811045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 47 - 124
Target Start/End: Original strand, 41590497 - 41590573
Alignment:
Q  47 aacatatctcggataggctctgataccatattaaactttgggttgggactaactgaaccttacaaaaccgacttgtaa 124  Q
    ||||||||| ||||||||||||||||||| ||| | |||||||| || |||||| |||||||| |||||| |||||||    
T  41590497 aacatatctaggataggctctgataccatcttagaatttgggtt-ggcctaactcaaccttacgaaaccggcttgtaa 41590573  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 67 - 159
Target Start/End: Complemental strand, 347170 - 347078
Alignment:
Q  67 tgataccatattaaactttgggttgggactaactgaaccttacaaaaccgacttgtaacgtgaagactaccctcacatataaacacattttca 159  Q
    ||||| ||||||| | ||||||||||  |||||| ||||||||||||||  ||||||| ||||  |||||||| || ||||||||||| ||||    
T  347170 tgataacatattagaatttgggttggccctaactcaaccttacaaaaccagcttgtaaggtgagcactaccctaacttataaacacatgttca 347078  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 74 - 148
Target Start/End: Original strand, 31293953 - 31294027
Alignment:
Q  74 atattaaactttgggttgggactaactgaaccttacaaaaccgacttgtaacgtgaagactaccctcacatataa 148  Q
    |||||||||||| ||||||| |||||| ||| ||||||||| ||||||||| |||| || | ||||||| |||||    
T  31293953 atattaaacttttggttgggcctaactcaactttacaaaactgacttgtaaagtgaggattgccctcacttataa 31294027  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 57 - 129
Target Start/End: Complemental strand, 40571663 - 40571592
Alignment:
Q  57 ggataggctctgataccatattaaactttgggttgggactaactgaaccttacaaaaccgacttgtaacgtga 129  Q
    |||||| || ||||||||| ||||| ||||| ||||| |||||| |||||||||||||| |||||||| ||||    
T  40571663 ggatagactttgataccatcttaaa-tttggattgggcctaactcaaccttacaaaaccaacttgtaaggtga 40571592  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 131
Target Start/End: Original strand, 19809945 - 19809999
Alignment:
Q  77 ttaaactttgggttgggactaactgaaccttacaaaaccgacttgtaacgtgaag 131  Q
    ||||| ||||||||||| |||||| |||||||||||| || ||||||| ||||||    
T  19809945 ttaaattttgggttgggcctaactcaaccttacaaaatcggcttgtaaggtgaag 19809999  T

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Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 191
Target Start/End: Complemental strand, 43480443 - 43480341
Alignment:
Q  89 ttgggactaactgaaccttacaaaaccgacttgtaacgtgaagactaccctcacatataaacacattttcagaccattactcatctaatgtgggactctt 188  Q
    ||||| |||||| | ||||| ||||||| ||||| | |||| |||||||| ||| | ||||||| | ||||| ||||  |||||| ||| ||||||||||    
T  43480443 ttgggtctaactcatccttaaaaaaccggcttgtgaggtgaggactacccccacttgtaaacacttgttcaggccatctctcatccaatatgggactctt 43480344  T
Q  189 taa 191  Q
    |||    
T  43480343 taa 43480341  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 250
Target Start/End: Complemental strand, 1255213 - 1255181
Alignment:
Q  218 gacttttaaggtagatatgattaacgtcaaata 250  Q
    |||||||||||||||||||||||| ||||||||    
T  1255213 gacttttaaggtagatatgattaaagtcaaata 1255181  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 108 - 188
Target Start/End: Complemental strand, 38668411 - 38668331
Alignment:
Q  108 acaaaaccgacttgtaacgtgaagactaccctcacatataaacacattttcagaccattactcatctaatgtgggactctt 188  Q
    ||||||||||||||||| |||| || | ||| ||| |||||||||||| ||| ||||| ||  |||  |||||||||||||    
T  38668411 acaaaaccgacttgtaaggtgatgattgcccccacttataaacacattgtcaaaccatcacatatccgatgtgggactctt 38668331  T

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Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 52 - 100
Target Start/End: Original strand, 40188669 - 40188717
Alignment:
Q  52 atctcggataggctctgataccatattaaactttgggttgggactaact 100  Q
    |||| ||||||||||||| ||||| ||||| |||||||||| |||||||    
T  40188669 atcttggataggctctgacaccatcttaaaatttgggttggcactaact 40188717  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 143 - 191
Target Start/End: Original strand, 466317 - 466365
Alignment:
Q  143 atataaacacattttcagaccattactcatctaatgtgggactctttaa 191  Q
    ||||||||||||| |||| ||||  |||||| |||||||||||||||||    
T  466317 atataaacacattgtcaggccatatctcatccaatgtgggactctttaa 466365  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 87 - 191
Target Start/End: Complemental strand, 16570231 - 16570127
Alignment:
Q  87 ggttgggactaactgaaccttacaaaaccgacttgtaacgtgaagactaccctcacatataaacacattttcagaccattactcatctaatgtgggactc 186  Q
    ||||||| |||||  ||||  ||||||||||||||| |||||| || ||||| | | |||||||||||| ||||  |||  || |||| |||||| ||||    
T  16570231 ggttgggcctaacacaaccccacaaaaccgacttgttacgtgaggattacccccgcttataaacacattgtcaggacatctcttatcttatgtggtactc 16570132  T
Q  187 tttaa 191  Q
    |||||    
T  16570131 tttaa 16570127  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 107 - 191
Target Start/End: Original strand, 30179740 - 30179824
Alignment:
Q  107 tacaaaaccgacttgtaacgtgaagactaccctcacatataaacacattttcagaccattactcatctaatgtgggactctttaa 191  Q
    |||||||| ||||||| | |||| || ||||| ||| |||||||||||| ||||  |||  || |||| ||||||||||||||||    
T  30179740 tacaaaactgacttgtgaggtgaggattacccccacttataaacacattgtcaggtcatctcttatctgatgtgggactctttaa 30179824  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 58 - 114
Target Start/End: Complemental strand, 54861661 - 54861605
Alignment:
Q  58 gataggctctgataccatattaaactttgggttgggactaactgaaccttacaaaac 114  Q
    |||||||||| ||||||| ||||| |||||||||||  ||||| ||||| |||||||    
T  54861661 gataggctctcataccatcttaaaatttgggttgggcgtaactcaacctaacaaaac 54861605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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