View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19303_low_4 (Length: 512)
Name: NF19303_low_4
Description: NF19303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19303_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 451; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 10 - 496
Target Start/End: Original strand, 14782156 - 14782642
Alignment:
| Q |
10 |
aaaatccccacatacacataacagttgaaacagctttcaaaccaccaaatgcatctctataaactataacaccacccaacacattcatagacaacaatgc |
109 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
14782156 |
aaaatccccacatacacaaaacagttgaaacagctttcaaaccaccaaatgcatctctataaactataacaccacccaacacattcatagacaacaaagc |
14782255 |
T |
|
| Q |
110 |
tgtcatgcaaatcccaccagttaatgaagatgtcaaaaacaccatcccagcagtccccataaaacaaaactgccacgtcacgacattcgccataaccgtc |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
14782256 |
tgtcatgcaaatcccaccagttaatgaagatgtcaaaaacaccatcccagcagtccccataaaacaaaactgccacgtcacgacattagccataaccgtc |
14782355 |
T |
|
| Q |
210 |
acccaataaaccctacttcccttgtcaaaaacctcctcactttctctcttcatttctttaaatccgccgtcccacgccattcctaccgtcgctaaaaccg |
309 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| |
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| T |
14782356 |
acccaataaaccctacttcccttgtcaaaaacctcctcactttctctcttcatttctttaaatccaccgtcccatgccattcctaccgtcgctaaaaccg |
14782455 |
T |
|
| Q |
310 |
tcgctgcaatctccattataagctgcatttccatcaccatttcgtaacaataaacctttttataaaccttctccataactggtaaataaagtgcaaataa |
409 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
14782456 |
tcgctgcaatctccattataagctgcatttccatcaccatttcgtaacaataaacctttttataaactttctccataactggtaaataaagtgcaaataa |
14782555 |
T |
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| Q |
410 |
caaccctgcaccaagggtgcaaaagaatccaataaagtattcttttttcgttagtccttttggtctctcagcactagaattcaatgc |
496 |
Q |
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| T |
14782556 |
caaccctgcaccaagggtgcaaaagaatccaataaagtattctttttttgttagtccttttggtctctcactactagaattcaatgc |
14782642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 12 - 496
Target Start/End: Original strand, 14774281 - 14774765
Alignment:
| Q |
12 |
aatccccacatacacataacagttgaaacagctttcaaaccaccaaatgcatctctataaactataacaccacccaacacattcatagacaacaatgctg |
111 |
Q |
| |
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||||||||||| |||| ||||||||||||||| || | ||||||||||||||||||| | || | |||||| ||||||||||||||||||||||| |||| |
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| T |
14774281 |
aatccccacatgcacaaaacagttgaaacagccttaacaccaccaaatgcatctctaaacaccaaaacacctcccaacacattcatagacaacaaagctg |
14774380 |
T |
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| Q |
112 |
tcatgcaaatcccaccagttaatgaagatgtcaaaaacaccatcccagcagtccccataaaacaaaactgccacgtcacgacattcgccataaccgtcac |
211 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| ||||| |||||||| ||||| |
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| T |
14774381 |
tcatacaaatcccaccagttaatgaagatgtcaaaaacaccattccagcagttcccataaaacaaaactgccacgtcaccacattagccataactgtcac |
14774480 |
T |
|
| Q |
212 |
ccaataaaccctacttcccttgtcaaaaacctcctcactttctctcttcatttctttaaatccgccgtcccacgccattcctaccgtcgctaaaaccgtc |
311 |
Q |
| |
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|||||||||| ||||||||| ||||||| || |||||||||||||||||||| |||||| || ||| |||| |||| || |||||||| || |
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| T |
14774481 |
ccaataaaccaaacttcccttatcaaaaatttcttcactttctctcttcatttcagaaaatccaccatccattcccatacctatagtagctaaaacagtg |
14774580 |
T |
|
| Q |
312 |
gctgcaatctccattataagctgcatttccatcaccatttcgtaacaataaacctttttataaaccttctccataactggtaaataaagtgcaaataaca |
411 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||| | |||||||||||||||||| ||||||||||| | ||||||||||| |
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| T |
14774581 |
gctgcaatctccattataagctgcatttccatcaccatttcataacaataaacatctttataaaccttctccatcactggtaaatacaatgcaaataaca |
14774680 |
T |
|
| Q |
412 |
accctgcaccaagggtgcaaaagaatccaataaagtattcttttttcgttagtccttttggtctctcagcactagaattcaatgc |
496 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||| |||||||| ||||| || |||||| | ||| |||||||| |||||| |
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|
| T |
14774681 |
accctgcaccaattgtgcaaaagaatccaataaagtactcttttttagttagcccatttggtttttcattactagaatccaatgc |
14774765 |
T |
|
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