View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19303_low_5 (Length: 500)
Name: NF19303_low_5
Description: NF19303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19303_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 312; Significance: 1e-176; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 126 - 485
Target Start/End: Complemental strand, 39557707 - 39557346
Alignment:
| Q |
126 |
ggactttccaacttagaggcaagaacatgtgaattatgcaatgtaacgagtaatcaaaaaggaaaagataggcagaaaaagagtgaatcaagggcatcaa |
225 |
Q |
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| T |
39557707 |
ggactttccaacttagaggcaagagcatgtgaattatgcaatgtaacgagtaatcaaaaaggaaaagataggcagaaaaagagtgaatcaagggcatcga |
39557608 |
T |
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| Q |
226 |
caaatagataatattgaatagtaatgtggccaccctaccaaccccaatgatatatgataaattatgctttttaggtagcttttggctcacaatagtggca |
325 |
Q |
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| T |
39557607 |
caaatagataatattgaatagtaatgtggccaccctaccaaccccaatgatatatgataaattatgctttttaggtagcttttggctcacaatagtggca |
39557508 |
T |
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| Q |
326 |
gaggcagtctaggagataataaggtatgggcagaacacactcacccaccgaccttgctatctagcagcc--tatcttttacatgtttgtcttcttgttgt |
423 |
Q |
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| T |
39557507 |
gaggcagtctaggagataataaggtatgggcagaacacactcacccaccgaccttgctatctagcagcctatatcttttacatgtttgtcttcttgttgt |
39557408 |
T |
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| Q |
424 |
gtcaatccaaatcgtgannnnnnnnnccacctcgagggacaaggttgtttggaggttaatta |
485 |
Q |
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| T |
39557407 |
gtcaatccaaatcgtgatgttttttttcacctcgagggacaaggttgtttggaggttaatta |
39557346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 54
Target Start/End: Complemental strand, 39557820 - 39557779
Alignment:
| Q |
13 |
aatattatatccaaaaagtttagtggcgtaactttttaacta |
54 |
Q |
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| T |
39557820 |
aatatcatatccaaaaaatttagtggcgtagctttttaacta |
39557779 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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