View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19303_low_6 (Length: 496)
Name: NF19303_low_6
Description: NF19303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19303_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 426; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 1 - 481
Target Start/End: Complemental strand, 2153076 - 2152607
Alignment:
| Q |
1 |
caatgattagttataacctatcaatcaatgacacatacaccatattgacactgacacattgaaatcagtaataatttgaaaaattgatgtaatcgaatat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2153076 |
caatgattagttataacctatcaatcaatgacacatacacgatattgacactgacacattgaaatcagtaataatttgaaaaattgatgtaatc------ |
2152983 |
T |
|
| Q |
101 |
aatcacattgtcggtgtctgacactaacacggacaccagacacgtaaacaatatcggccattgatttcaaattggagacttaaattcaaaattaacaaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
2152982 |
----acattgtcggtgtctgacactaacacggacaccagacatgtaaacaatatcggccattgatt-caaattggagacttaaattcaaaattaacaaaa |
2152888 |
T |
|
| Q |
201 |
tcagtttgaaataatatttacctttgattcagatcagatggtagaaatttaaaactgtgtgatgcatttattacagtggatccatttcagacacttgaca |
300 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2152887 |
tcagtttgaattaatatttacctttgattcagatcagatggtagaaatttaaaactgtgtgatgcatttattacagtggatccatttcagacacttgaca |
2152788 |
T |
|
| Q |
301 |
atactatgtcataatgtccatttccatagaaatttactgcatggaatttgaatttacatgatactaactaatttgattggtggtaaaatttcagcaatct |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2152787 |
atactatgtcataatgtccatttccatagaaatttactgcatggaatttgaatttacatgatactaactaatttgattggtggtaaaatttcagcaatct |
2152688 |
T |
|
| Q |
401 |
gggagagtaacatacaatgggaaaggactagaagagtttgttccacaaagaacatcagcttatgtaagtcaatatgataat |
481 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2152687 |
gggagagtaacatacaatgggaaaggactagaagagtttgttccacaaagaacatcagcttatgtaagtcaatatgataat |
2152607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 365 - 481
Target Start/End: Complemental strand, 2164979 - 2164863
Alignment:
| Q |
365 |
taactaatttgattggtggtaaaatttcagcaatctgggagagtaacatacaatgggaaaggactagaagagtttgttccacaaagaacatcagcttatg |
464 |
Q |
| |
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|||||||||||||||||| | ||| |||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||| |
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| T |
2164979 |
taactaatttgattggtgatgaaacttcagcaatctgggagagtaacatacaacgggaaaggactagacgagtttgttccacaaagaacatccgcttata |
2164880 |
T |
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| Q |
465 |
taagtcaatatgataat |
481 |
Q |
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|||||||| |||||||| |
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| T |
2164879 |
taagtcaacatgataat |
2164863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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