View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19303_low_9 (Length: 462)
Name: NF19303_low_9
Description: NF19303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19303_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 316
Target Start/End: Complemental strand, 36458361 - 36458064
Alignment:
| Q |
1 |
aagcttttaagaagatgaaggacatttattttgtcaacaatggaatcactatgcacgcaggggtgttatttggtttagaagtgacagtttaggattagaa |
100 |
Q |
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| T |
36458361 |
aagcttttaagaagatgaaggacatttattttgtcaacaatggaatcactatgcacgcaggggtgttatttgggttagaagtgacagtttaggattagaa |
36458262 |
T |
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| Q |
101 |
aaagaaaattgtaaaaatatattggtattctttgttttggaatcaacgttattactttaatgtctatattactactttagtttctctaaagcttatcatg |
200 |
Q |
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| T |
36458261 |
aaagaaaattgtaaaaatatattggtattctttgttttggaatcaacgttattactttaatgtctatattactactttagtttctctaaagcttatca-- |
36458164 |
T |
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| Q |
201 |
aattagaaacttgaatgaaatagagagccacataaagtgaaagcctattatccaaccaatggcatactcctcctaggtgatagaaataatttatagcaag |
300 |
Q |
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| T |
36458163 |
---------------tgaaatagagagccacataaagtgaaagcctattatccaaccaatggcatgctcctcctaggtgatacaagtaatttgtag-aag |
36458080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 317 - 441
Target Start/End: Complemental strand, 36457924 - 36457800
Alignment:
| Q |
317 |
aaataagatgcaaatgagtacatgaggtactcaaccccaatacacaatgttcaacttctataacattctaaatagcataaactccagccgcagaatgtca |
416 |
Q |
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|||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |
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| T |
36457924 |
aaataagatgcatatgagtacataaggtactcaaccccaatacacaatgttcaacttttataacattctaaatagcataaactccagccagagaatgtca |
36457825 |
T |
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| Q |
417 |
ttttcggtctgctacctattttcga |
441 |
Q |
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| T |
36457824 |
ttttcggtctgctacctattttcga |
36457800 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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