View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19304_high_13 (Length: 302)
Name: NF19304_high_13
Description: NF19304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19304_high_13 |
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Alignment Details
Target: chr1 (Bit Score: 265; Significance: 1e-148; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 277
Target Start/End: Original strand, 3016967 - 3017243
Alignment:
| Q |
1 |
atcttcttttgaaaatctacatgatatgtcaagccgttggtatgaaacaaggatttcaatccttgaaacagtcgcaaaagtcaggttatgtgtggtaatg |
100 |
Q |
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| T |
3016967 |
atcttcttttgaaaatctacatgatatgtcaagccgttggtatgaaacaaggatttcaatccttgaaacagttgcaaaagtcaggttatgtgtggtaatg |
3017066 |
T |
|
| Q |
101 |
ctggatcttgaatgtgatgccctcattttggagatgtttcggcttttcttgaagacaataaggtaagaactgttgcatacatgactacaggcttagcatt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
3017067 |
ctggatcttgaatgtgatgccctcattttggagatgtttcggcttttcttgaagacaataaggtaagaactgttgcatacatgactacaggtctagcatt |
3017166 |
T |
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| Q |
201 |
atagcttcggtattttatctttgcatttcttagattttacgttgaacttgaccccacaaaactgacttgtaaggtga |
277 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3017167 |
atagcttcggtattttatctttgcatttcttagattttacgttgaacttgaccccacaaaactgacttgtaaggtga |
3017243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 1 - 165
Target Start/End: Original strand, 3032703 - 3032867
Alignment:
| Q |
1 |
atcttcttttgaaaatctacatgatatgtcaagccgttggtatgaaacaaggatttcaatccttgaaacagtcgcaaaagtcaggttatgtgtggtaatg |
100 |
Q |
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|||||| ||||||||||||||||||| ||||||||| ||||| || |||| || |||||| |||||||| ||||||||||||| ||||||||||||| |
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| T |
3032703 |
atcttcatttgaaaatctacatgataagtcaagccgatggtactcaaagaggactttaatcctcgaaacagttgcaaaagtcaggtcatgtgtggtaatg |
3032802 |
T |
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| Q |
101 |
ctggatcttgaatgtgatgccctcattttggagatgtttcggcttttcttgaagacaataaggta |
165 |
Q |
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| T |
3032803 |
ctggatcttgaatgcgatgccctcattttggagatgtttcagcatttcttgaagacaataaggta |
3032867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 1 - 164
Target Start/End: Complemental strand, 48970018 - 48969855
Alignment:
| Q |
1 |
atcttcttttgaaaatctacatgatatgtcaagccgttggtatgaaacaaggatttcaatccttgaaacagtcgcaaaagtcaggttatgtgtggtaatg |
100 |
Q |
| |
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|||||| ||||||||||||||||||| || |||||| | |||||| | |||| | |||| ||||| || ||||| ||||| | ||||||||||||| |
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| T |
48970018 |
atcttcatttgaaaatctacatgataagttaagccgatcgtatgagaataggagaatagtcctcgaaactgttgcaaaggtcagatcatgtgtggtaatg |
48969919 |
T |
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| Q |
101 |
ctggatcttgaatgtgatgccctcattttggagatgtttcggcttttcttgaagacaataaggt |
164 |
Q |
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|||| ||||| |||||||| || |||||||||||||||| || ||| |||||||| ||||||| |
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| T |
48969918 |
ttggaccttgattgtgatgcgctgattttggagatgtttcagcattttttgaagaccataaggt |
48969855 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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