View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19304_high_8 (Length: 325)
Name: NF19304_high_8
Description: NF19304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19304_high_8 |
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Alignment Details
Target: chr8 (Bit Score: 286; Significance: 1e-160; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 298
Target Start/End: Original strand, 36150879 - 36151176
Alignment:
| Q |
1 |
cccttaccatcaacaacagcatcaacaccattaccagcaacaacagcaacagcgccatcaccaggattaagcacagttccacttgttccaacaacaccaa |
100 |
Q |
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| T |
36150879 |
cccttaccatcaacaacagcatcaacaccattaccagcaacaacagcaacagcgccatcaccaggattaagcacagttccacttgttccaacaacaccag |
36150978 |
T |
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| Q |
101 |
ctggtgcaccatcacccaccataacagtcccaaaaggacccaccattgacataatcaacattcttcaaaaagccaaaaggttctccgttctaatccgtct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36150979 |
ctggtgcaccatcacccaccataacagtcccaaaaggacccaccattgacataatcaacattcttcaaaaagccaaaaggttctccgttctaatccgtct |
36151078 |
T |
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| Q |
201 |
tctcaaaacaacacaattaatcaatcaactcaactcacagctggtatcatcgccatcaggttccggagggttaaccatttttgcaccagaagattctg |
298 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
36151079 |
tctcaaaacaacacaattaatcaatcaactcaactcgcagctggtatcatcgccatcaggttccggtgggttaaccatttttgcaccagaagattctg |
36151176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 298
Target Start/End: Original strand, 36154265 - 36154562
Alignment:
| Q |
1 |
cccttaccatcaacaacagcatcaacaccattaccagcaacaacagcaacagcgccatcaccaggattaagcacagttccacttgttccaacaacaccaa |
100 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||| |
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| T |
36154265 |
cccttaccatcaacaacagcatcaccaccattaccagcaacaacagcaacagcaccatcaccaggattaagtacagttccgcttgttccaacaacaccaa |
36154364 |
T |
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| Q |
101 |
ctggtgcaccatcacccaccataacagtcccaaaaggacccaccattgacataatcaacattcttcaaaaagccaaaaggttctccgttctaatccgtct |
200 |
Q |
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| T |
36154365 |
ctggtgcaccatcacccaccataacagtcccaaaaggacccaccattgacataatcaacattcttcaaaaagccaaaaggttctccgttctaatccgtct |
36154464 |
T |
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| Q |
201 |
tctcaaaacaacacaattaatcaatcaactcaactcacagctggtatcatcgccatcaggttccggagggttaaccatttttgcaccagaagattctg |
298 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36154465 |
tctcaaaacaacacaattaatcaatcaactcaactcgcagctggtatcatcgccatcaggttccggagggttaaccatttttgcaccagaagattctg |
36154562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 167 - 239
Target Start/End: Original strand, 5273544 - 5273616
Alignment:
| Q |
167 |
aaaaagccaaaaggttctccgttctaatccgtcttctcaaaacaacacaattaatcaatcaactcaactcaca |
239 |
Q |
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||||||| ||||| ||||| ||||| || ||||||||||||||||| || ||||| || |||||||||||||| |
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| T |
5273544 |
aaaaagcaaaaagattctcagttctcattcgtcttctcaaaacaactcagttaataaaccaactcaactcaca |
5273616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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