View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19304_high_9 (Length: 324)
Name: NF19304_high_9
Description: NF19304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19304_high_9 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 11 - 324
Target Start/End: Complemental strand, 4191770 - 4191451
Alignment:
| Q |
11 |
aataagatggtctttttaattgcttattgtaaatgttaatgagtgactgttttctatctctagtgataaacctctctaatgtgcttggtgacaaaactca |
110 |
Q |
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| T |
4191770 |
aataagatggtctttttaattgctt--tgtaaatgttaatgagtgactgttttctctctctagtgataaacctctctaatgtgcttggtgacaaaactca |
4191673 |
T |
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| Q |
111 |
tccgagaggagagaagaaccaaactgctaaattnnnnnnn-----------tgcattatattatgatatgtttttcattttccacactaatcacctctct |
199 |
Q |
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| T |
4191672 |
tccgagaggagagaagaaccaaactgctaaattaaaaaataaaataaaaaatgcattatat---gatatgtttttcattttccacactaatcacctctct |
4191576 |
T |
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| Q |
200 |
tttattagcaaaatgataaaactatctttagtgtcccgtattcgtcnnnnnnnttatgtgcaaattcatttctctcttacatgtatgatagacttaacta |
299 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||| ||| || |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4191575 |
tttattagcaaaatgacaaaactatctttagtgtcccgtatttgtcaaaaaaattgtgtgcaaattcatttctctcttacatgtatgatagacttaacta |
4191476 |
T |
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| Q |
300 |
agacagtattcatgtaataactttc |
324 |
Q |
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| T |
4191475 |
aaacagtattcatgtaataactttc |
4191451 |
T |
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