View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19304_low_1 (Length: 763)
Name: NF19304_low_1
Description: NF19304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19304_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 559; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 559; E-Value: 0
Query Start/End: Original strand, 18 - 743
Target Start/End: Original strand, 4191451 - 4192190
Alignment:
| Q |
18 |
gaaagttattacatgaatactgtcttagttaagtctatcatacatgtaagagagaaatgaatttgcacataannnnnnngacgaatacgggacactaaag |
117 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || ||| ||||||||||||||||| |
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| T |
4191451 |
gaaagttattacatgaatactgttttagttaagtctatcatacatgtaagagagaaatgaatttgcacacaatttttttgacaaatacgggacactaaag |
4191550 |
T |
|
| Q |
118 |
atagttttatcattttgctaataaaagagaggtgattagtgtggaaaatgaaaaacatatcataatataatgcannnnnnn-----------aatttagc |
206 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| |
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| T |
4191551 |
atagttttgtcattttgctaataaaagagaggtgattagtgtggaaaatgaaaaacatatcata---taatgcattttttattttattttttaatttagc |
4191647 |
T |
|
| Q |
207 |
agtttggttcttctctcctctcggatgagttttgtcaccaagcacattagagaggtttatcactagagatagaaaacagtcactcattaacatttacaat |
306 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
4191648 |
agtttggttcttctctcctctcggatgagttttgtcaccaagcacattagagaggtttatcactagagagagaaaacagtcactcattaacatttacaa- |
4191746 |
T |
|
| Q |
307 |
aagcaattaaaaagaccatcttattctttagaataacaatgctaactgaatacccgaattaaaaattgttatcaagatgtcatcaaaatcttagaaatga |
406 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| ||||||||| |
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| T |
4191747 |
-agcaattaaaaagaccatcttattctttagaataacaatgctaactgaatatccgaattaaacattgttatcaagatgtcatcaaaatcgtagaaatga |
4191845 |
T |
|
| Q |
407 |
catctactacgatctctcttgctatcagttaacttattcaatatccctctttttatgttcatccgttatcattaacttatttattatccactggttatta |
506 |
Q |
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| T |
4191846 |
catctactacgatctctcttgctatcagttaacttattcaatatccctctttttatgttcatccgttatcattaacttatttattatccactggttatta |
4191945 |
T |
|
| Q |
507 |
tttcaaaataacac--------aagagagttgttgttctcacgtccattgtttcttttttggtcatttccatgtgtttgtatgaaacaatggatgtgtca |
598 |
Q |
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| T |
4191946 |
tttcaaaataacacctttgaagaagagagttgttgttctcacctccattgtttcttttttggtcattttcatgtgtttgtaggaaacaatggatgtgtaa |
4192045 |
T |
|
| Q |
599 |
gcagcaattttctgaatgttacgcccaatgagttcaggcccagcatttttagtatttcaggcccaagcccaacaagtgttgaacggatagaatcagataa |
698 |
Q |
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| T |
4192046 |
acagcaattttctgaatgttacgcccaatgagttcaggcccagcatttttagtatttcaggcccaagcccaacaagtgttgaacggatagaatcagataa |
4192145 |
T |
|
| Q |
699 |
gagctgtttatgtaagtgcttcatcttcttccccacgttttcgct |
743 |
Q |
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|
| T |
4192146 |
gagctgtttatgtaagtgcttcatcttcttccccacgttttcgct |
4192190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.000000001; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 553 - 594
Target Start/End: Original strand, 53860894 - 53860935
Alignment:
| Q |
553 |
ttttttggtcatttccatgtgtttgtatgaaacaatggatgt |
594 |
Q |
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| T |
53860894 |
ttttttggtcatttccatgtgtttctaggaaacaatggatgt |
53860935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 553 - 595
Target Start/End: Complemental strand, 53860827 - 53860785
Alignment:
| Q |
553 |
ttttttggtcatttccatgtgtttgtatgaaacaatggatgtg |
595 |
Q |
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| T |
53860827 |
ttttttggtcatttccatgtgtttctaggaaacattggatgtg |
53860785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 553 - 595
Target Start/End: Original strand, 54923065 - 54923107
Alignment:
| Q |
553 |
ttttttggtcatttccatgtgtttgtatgaaacaatggatgtg |
595 |
Q |
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| T |
54923065 |
ttttttggtcatttccatgtgtctctaggaaacaatggatgtg |
54923107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 553 - 594
Target Start/End: Original strand, 24145211 - 24145252
Alignment:
| Q |
553 |
ttttttggtcatttccatgtgtttgtatgaaacaatggatgt |
594 |
Q |
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| T |
24145211 |
ttttttggtcatttccatgtgtttctaagaaataatggatgt |
24145252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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