View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19304_low_2 (Length: 280)

Name: NF19304_low_2
Description: NF19304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19304_low_2
NF19304_low_2
[»] chr6 (2 HSPs)
chr6 (1-265)||(11390781-11391045)
chr6 (1-265)||(11419579-11419843)
[»] chr3 (9 HSPs)
chr3 (112-260)||(24614679-24614827)
chr3 (112-260)||(24108840-24108988)
chr3 (115-263)||(24116550-24116698)
chr3 (112-260)||(23689780-23689928)
chr3 (112-260)||(23693238-23693386)
chr3 (112-260)||(23711678-23711826)
chr3 (112-260)||(23730134-23730282)
chr3 (112-260)||(23748589-23748737)
chr3 (112-260)||(24062017-24062165)


Alignment Details
Target: chr6 (Bit Score: 257; Significance: 1e-143; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 265
Target Start/End: Complemental strand, 11391045 - 11390781
Alignment:
Q  1 cttgaaaatttcctaaaaacatgcatggttccatctctacaaatttcattgcacaattctatcataaccatagcacacgatcttaactccttctccgagt 100  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11391045 cttgaaaatttcctaaaaacatgcattgttccatctctacaaatttcattgcacaattctatcataaccatagcacacgatcttaactccttctccgagt 11390946  T
Q  101 aaccggttccggtacatatcttcaaatcattgttccataaaggataccttccaataacaattcttgcacaatacacagcagaagcagcaatcatagaagg 200  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11390945 atccggttccggtacatatcttcaaatcattgttccataaaggataccttccaataacaattcttgcacaatacacagcagaagcagcaatcatagaagg 11390846  T
Q  201 tttatagtcacacacaattgaataatgtgtcaagctcagctctgaaaagaaaaacaccatatttt 265  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11390845 tttatagtcacacacaattgaataatgtgtcaagctcagctctgaaaagaaaaacaccatatttt 11390781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 1 - 265
Target Start/End: Original strand, 11419579 - 11419843
Alignment:
Q  1 cttgaaaatttcctaaaaacatgcatggttccatctctacaaatttcattgcacaattctatcataaccatagcacacgatcttaactccttctccgagt 100  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  11419579 cttgaaaatttcctaaaaacatgcattgttccatctctacaaatttcattgcagaattctatcataaccatagcacacgatcttaactccttctccgagt 11419678  T
Q  101 aaccggttccggtacatatcttcaaatcattgttccataaaggataccttccaataacaattcttgcacaatacacagcagaagcagcaatcatagaagg 200  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11419679 atccggttccggtacatatcttcaaatcattgttccataaaggataccttccaataacaattcttgcacaatacacagcagaagcagcaatcatagaagg 11419778  T
Q  201 tttatagtcacacacaattgaataatgtgtcaagctcagctctgaaaagaaaaacaccatatttt 265  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11419779 tttatagtcacacacaattgaataatgtgtcaagctcagctctgaaaagaaaaacaccatatttt 11419843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 73; Significance: 2e-33; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 112 - 260
Target Start/End: Complemental strand, 24614827 - 24614679
Alignment:
Q  112 gtacatatcttcaaatcattgttccataaaggataccttccaataacaattcttgcacaatacacagcagaagcagcaatcatagaaggtttatagtcac 211  Q
    ||||| ||||||||||||||| |||| || ||||||||||||| |||||  |||||||||||||| | | ||||||||||||| ||||| |||||||| |    
T  24614827 gtacacatcttcaaatcattgctccaaaagggataccttccaacaacaaaccttgcacaatacacggaacaagcagcaatcattgaaggcttatagtcgc 24614728  T
Q  212 acacaattgaataatgtgtcaagctcagctctgaaaagaaaaacaccat 260  Q
    ||||||| || | || ||||||||||||||| || ||||||||||||||    
T  24614727 acacaatggattgatttgtcaagctcagctcagagaagaaaaacaccat 24614679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 112 - 260
Target Start/End: Original strand, 24108840 - 24108988
Alignment:
Q  112 gtacatatcttcaaatcattgttccataaaggataccttccaataacaattcttgcacaatacacagcagaagcagcaatcatagaaggtttatagtcac 211  Q
    ||||| ||||||||||||||| |||| || ||||||||| ||| |||||  |||||||||||||| | | ||||||||||||| ||||| |||||||| |    
T  24108840 gtacacatcttcaaatcattgctccaaaagggatacctttcaacaacaaaccttgcacaatacacggaacaagcagcaatcattgaaggcttatagtcgc 24108939  T
Q  212 acacaattgaataatgtgtcaagctcagctctgaaaagaaaaacaccat 260  Q
    ||||||| |||| || ||||||||| || || |||||||||||||||||    
T  24108940 acacaatagaatgatttgtcaagctgagttcagaaaagaaaaacaccat 24108988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 115 - 263
Target Start/End: Original strand, 24116550 - 24116698
Alignment:
Q  115 catatcttcaaatcattgttccataaaggataccttccaataacaattcttgcacaatacacagcagaagcagcaatcatagaaggtttatagtcacaca 214  Q
    |||||||||||||||||| |||| || ||||||||| ||| |||||  |||||||||||||| | | ||||||||||||  ||||| || ||||| ||||    
T  24116550 catatcttcaaatcattgctccaaaagggatacctttcaacaacaaaccttgcacaatacacggaacaagcagcaatcaatgaaggcttgtagtcgcaca 24116649  T
Q  215 caattgaataatgtgtcaagctcagctctgaaaagaaaaacaccatatt 263  Q
    |||| |||| || ||||||||| |  || ||||||||||||||||||||    
T  24116650 caatagaatgatttgtcaagctgacttccgaaaagaaaaacaccatatt 24116698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 112 - 260
Target Start/End: Complemental strand, 23689928 - 23689780
Alignment:
Q  112 gtacatatcttcaaatcattgttccataaaggataccttccaataacaattcttgcacaatacacagcagaagcagcaatcatagaaggtttatagtcac 211  Q
    ||||| ||||||||||||||| |||| || ||||||||| ||| |||||  |||||||||||||| | | ||||||||||||  ||||| || ||||| |    
T  23689928 gtacacatcttcaaatcattgctccaaaagggatacctttcaacaacaaaccttgcacaatacacggaacaagcagcaatcaatgaaggcttgtagtcgc 23689829  T
Q  212 acacaattgaataatgtgtcaagctcagctctgaaaagaaaaacaccat 260  Q
    | ||||| |||| || ||||||||| || || |||||||||||||||||    
T  23689828 agacaatggaatgatttgtcaagctgagttccgaaaagaaaaacaccat 23689780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 112 - 260
Target Start/End: Complemental strand, 23693386 - 23693238
Alignment:
Q  112 gtacatatcttcaaatcattgttccataaaggataccttccaataacaattcttgcacaatacacagcagaagcagcaatcatagaaggtttatagtcac 211  Q
    ||||| || |||||||||||| |||| || ||||||||||||| || ||  ||||||  |||||| ||| ||||||||||||||||||| || ||||| |    
T  23693386 gtacacattttcaaatcattgctccaaaagggataccttccaacaataaaccttgcaagatacacggcacaagcagcaatcatagaaggcttgtagtcgc 23693287  T
Q  212 acacaattgaataatgtgtcaagctcagctctgaaaagaaaaacaccat 260  Q
    ||||||| |||| || ||| ||||| || || |||||||||||||||||    
T  23693286 acacaatagaatgatttgttaagctgagttcagaaaagaaaaacaccat 23693238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 112 - 260
Target Start/End: Complemental strand, 23711826 - 23711678
Alignment:
Q  112 gtacatatcttcaaatcattgttccataaaggataccttccaataacaattcttgcacaatacacagcagaagcagcaatcatagaaggtttatagtcac 211  Q
    ||||| || |||||||||||| |||| || ||||||||||||| || ||  ||||||  |||||| ||| ||||||||||||||||||| || ||||| |    
T  23711826 gtacacattttcaaatcattgctccaaaagggataccttccaacaataaaccttgcaagatacacggcacaagcagcaatcatagaaggcttgtagtcgc 23711727  T
Q  212 acacaattgaataatgtgtcaagctcagctctgaaaagaaaaacaccat 260  Q
    ||||||| |||| || ||| ||||| || || |||||||||||||||||    
T  23711726 acacaatagaatgatttgttaagctgagttcagaaaagaaaaacaccat 23711678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 112 - 260
Target Start/End: Complemental strand, 23730282 - 23730134
Alignment:
Q  112 gtacatatcttcaaatcattgttccataaaggataccttccaataacaattcttgcacaatacacagcagaagcagcaatcatagaaggtttatagtcac 211  Q
    ||||| || |||||||||||| |||| || ||||||||||||| || ||  ||||||  |||||| ||| ||||||||||||||||||| || ||||| |    
T  23730282 gtacacattttcaaatcattgctccaaaagggataccttccaacaataaaccttgcaagatacacggcacaagcagcaatcatagaaggcttgtagtcgc 23730183  T
Q  212 acacaattgaataatgtgtcaagctcagctctgaaaagaaaaacaccat 260  Q
    ||||||| |||| || ||| ||||| || || |||||||||||||||||    
T  23730182 acacaatagaatgatttgttaagctgagttcagaaaagaaaaacaccat 23730134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 112 - 260
Target Start/End: Complemental strand, 23748737 - 23748589
Alignment:
Q  112 gtacatatcttcaaatcattgttccataaaggataccttccaataacaattcttgcacaatacacagcagaagcagcaatcatagaaggtttatagtcac 211  Q
    ||||| || |||||||||||| |||| || ||||||||||||| || ||  ||||||  |||||| ||| ||||||||||||||||||| || ||||| |    
T  23748737 gtacacattttcaaatcattgctccaaaagggataccttccaacaataaaccttgcaagatacacggcacaagcagcaatcatagaaggcttgtagtcgc 23748638  T
Q  212 acacaattgaataatgtgtcaagctcagctctgaaaagaaaaacaccat 260  Q
    ||||||| |||| || ||| ||||| || || |||||||||||||||||    
T  23748637 acacaatagaatgatttgttaagctgagttcagaaaagaaaaacaccat 23748589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 112 - 260
Target Start/End: Complemental strand, 24062165 - 24062017
Alignment:
Q  112 gtacatatcttcaaatcattgttccataaaggataccttccaataacaattcttgcacaatacacagcagaagcagcaatcatagaaggtttatagtcac 211  Q
    ||||| ||||||||||||||| |||| || ||||||||| ||| |||||  |||||||||||||| | | ||||||||||||  ||||| || ||||| |    
T  24062165 gtacacatcttcaaatcattgctccaaaagggatacctttcaacaacaaaccttgcacaatacacggaacaagcagcaatcaatgaaggcttgtagtcgc 24062066  T
Q  212 acacaattgaataatgtgtcaagctcagctctgaaaagaaaaacaccat 260  Q
    | ||||| |||| || ||||||||| || || |||||||||||||||||    
T  24062065 agacaatggaatgatttgtcaagctgagttccgaaaagaaaaacaccat 24062017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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