View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19304_low_4 (Length: 245)

Name: NF19304_low_4
Description: NF19304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19304_low_4
NF19304_low_4
[»] chr5 (7 HSPs)
chr5 (34-228)||(22042553-22042746)
chr5 (1-35)||(20398667-20398701)
chr5 (1-34)||(19223555-19223588)
chr5 (1-34)||(20372945-20372978)
chr5 (1-34)||(24956878-24956911)
chr5 (1-34)||(24965341-24965374)
chr5 (1-34)||(29186310-29186343)
[»] chr7 (6 HSPs)
chr7 (1-34)||(30244775-30244808)
chr7 (1-34)||(4941609-4941642)
chr7 (1-34)||(4952429-4952462)
chr7 (1-34)||(10439937-10439970)
chr7 (1-34)||(12978455-12978488)
chr7 (1-34)||(18304424-18304457)
[»] chr2 (12 HSPs)
chr2 (1-36)||(20372345-20372380)
chr2 (1-34)||(14582925-14582958)
chr2 (1-34)||(15944589-15944622)
chr2 (1-34)||(15953104-15953137)
chr2 (1-34)||(17687430-17687463)
chr2 (1-34)||(20621518-20621551)
chr2 (1-34)||(25483601-25483634)
chr2 (1-34)||(25491207-25491240)
chr2 (1-34)||(35138593-35138626)
chr2 (1-34)||(35146929-35146962)
chr2 (1-34)||(41233876-41233909)
chr2 (1-34)||(42249487-42249520)
[»] scaffold0048 (1 HSPs)
scaffold0048 (1-35)||(7661-7695)
[»] chr6 (8 HSPs)
chr6 (1-35)||(5004060-5004094)
chr6 (1-35)||(5489151-5489185)
chr6 (1-35)||(25550294-25550328)
chr6 (1-35)||(35091708-35091742)
chr6 (1-34)||(5994699-5994732)
chr6 (1-34)||(13490193-13490226)
chr6 (1-34)||(23925335-23925368)
chr6 (1-34)||(30824561-30824594)
[»] chr3 (9 HSPs)
chr3 (1-35)||(28470249-28470283)
chr3 (1-35)||(50824351-50824385)
chr3 (1-35)||(50851475-50851509)
chr3 (1-34)||(30508-30541)
chr3 (1-34)||(8197728-8197761)
chr3 (1-34)||(14538637-14538670)
chr3 (1-34)||(17628265-17628298)
chr3 (1-34)||(17919199-17919232)
chr3 (1-34)||(27341367-27341400)
[»] scaffold0991 (1 HSPs)
scaffold0991 (1-34)||(405-438)
[»] scaffold0497 (1 HSPs)
scaffold0497 (1-34)||(10993-11026)
[»] scaffold0431 (1 HSPs)
scaffold0431 (1-34)||(139-172)
[»] scaffold0156 (1 HSPs)
scaffold0156 (1-34)||(35388-35421)
[»] scaffold0111 (1 HSPs)
scaffold0111 (1-34)||(33035-33068)
[»] scaffold0083 (1 HSPs)
scaffold0083 (1-34)||(15813-15846)
[»] scaffold0039 (1 HSPs)
scaffold0039 (1-34)||(40865-40898)
[»] scaffold0016 (1 HSPs)
scaffold0016 (1-34)||(23464-23497)
[»] scaffold0015 (1 HSPs)
scaffold0015 (1-34)||(192528-192561)
[»] scaffold0002 (1 HSPs)
scaffold0002 (1-34)||(121228-121261)
[»] chr8 (7 HSPs)
chr8 (1-34)||(4582204-4582237)
chr8 (1-34)||(17664672-17664705)
chr8 (1-34)||(17683828-17683861)
chr8 (1-34)||(17973565-17973598)
chr8 (1-34)||(26873636-26873669)
chr8 (1-34)||(26876086-26876119)
chr8 (1-34)||(30938282-30938315)
[»] chr4 (8 HSPs)
chr4 (1-34)||(8094314-8094347)
chr4 (1-34)||(8103120-8103153)
chr4 (1-34)||(10638328-10638361)
chr4 (1-34)||(12428510-12428543)
chr4 (1-34)||(12996476-12996509)
chr4 (1-34)||(21532336-21532369)
chr4 (1-34)||(27343723-27343756)
chr4 (1-34)||(52295604-52295637)
[»] chr1 (4 HSPs)
chr1 (1-34)||(21498930-21498963)
chr1 (1-34)||(31539954-31539987)
chr1 (1-34)||(31548523-31548556)
chr1 (1-34)||(35104096-35104129)


Alignment Details
Target: chr5 (Bit Score: 127; Significance: 1e-65; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 34 - 228
Target Start/End: Complemental strand, 22042746 - 22042553
Alignment:
Q  34 ataactacatcatctttaactactctttccacttgaaatggctggatatcgtgatgtgcttaaaagacaagttctgggaggttttgaaactgtacatctt 133  Q
    |||||||||||||||||||| ||||||||||||| |||||||||||||||||| ||| |||||||||||| |||| ||||||||||||||||||||||||    
T  22042746 ataactacatcatctttaacaactctttccacttcaaatggctggatatcgtgttgtacttaaaagacaaattctaggaggttttgaaactgtacatctt 22042647  T
Q  134 ccatatcaggtattctatattttcagttttcctaactgctaattttattttgttttactactctgcagtgttgttatacttcttcaatgtgcaca 228  Q
    |||||||||||||||||||||||||| |||||||||||||  |    | ||||| |||||||||||| |||||||||||||||||||||||||||    
T  22042646 ccatatcaggtattctatattttcagctttcctaactgct-ctgcactgttgttatactactctgcactgttgttatacttcttcaatgtgcaca 22042553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 20398667 - 20398701
Alignment:
Q  1 atagagaaaagtggtcaaaatttgaggtatgacat 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  20398667 atagagaaaagtggtcaaaatttggggtatgacat 20398701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 19223588 - 19223555
Alignment:
Q  1 atagagaaaagtggtcaaaatttgaggtatgaca 34  Q
    |||||||||||||||||||||||| |||||||||    
T  19223588 atagagaaaagtggtcaaaatttggggtatgaca 19223555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 20372945 - 20372978
Alignment:
Q  1 atagagaaaagtggtcaaaatttgaggtatgaca 34  Q
    |||||||||||||||||||||||| |||||||||    
T  20372945 atagagaaaagtggtcaaaatttggggtatgaca 20372978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 24956878 - 24956911
Alignment:
Q  1 atagagaaaagtggtcaaaatttgaggtatgaca 34  Q
    |||||||||||||||||||||||| |||||||||    
T  24956878 atagagaaaagtggtcaaaatttggggtatgaca 24956911  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 24965341 - 24965374
Alignment:
Q  1 atagagaaaagtggtcaaaatttgaggtatgaca 34  Q
    |||||||||||||||||||||||| |||||||||    
T  24965341 atagagaaaagtggtcaaaatttggggtatgaca 24965374  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 29186310 - 29186343
Alignment:
Q  1 atagagaaaagtggtcaaaatttgaggtatgaca 34  Q
    |||||||||||||||||||||||| |||||||||    
T  29186310 atagagaaaagtggtcaaaatttggggtatgaca 29186343  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 30244808 - 30244775
Alignment:
Q  1 atagagaaaagtggtcaaaatttgaggtatgaca 34  Q
    ||||||||||||||||||||||||||||||||||    
T  30244808 atagagaaaagtggtcaaaatttgaggtatgaca 30244775  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 4941609 - 4941642
Alignment:
Q  1 atagagaaaagtggtcaaaatttgaggtatgaca 34  Q
    |||||||||||||||||||||||| |||||||||    
T  4941609 atagagaaaagtggtcaaaatttggggtatgaca 4941642  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 4952429 - 4952462
Alignment:
Q  1 atagagaaaagtggtcaaaatttgaggtatgaca 34  Q
    ||||| ||||||||||||||||||||||||||||    
T  4952429 atagataaaagtggtcaaaatttgaggtatgaca 4952462  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 10439970 - 10439937
Alignment:
Q  1 atagagaaaagtggtcaaaatttgaggtatgaca 34  Q
    |||||||||||||||||||||||| |||||||||    
T  10439970 atagagaaaagtggtcaaaatttggggtatgaca 10439937  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 12978488 - 12978455
Alignment:
Q  1 atagagaaaagtggtcaaaatttgaggtatgaca 34  Q
    |||||||||||||||||||||||| |||||||||    
T  12978488 atagagaaaagtggtcaaaatttggggtatgaca 12978455  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 18304424 - 18304457
Alignment:
Q  1 atagagaaaagtggtcaaaatttgaggtatgaca 34  Q
    |||||||||||||||||||||||| |||||||||    
T  18304424 atagagaaaagtggtcaaaatttggggtatgaca 18304457  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 20372345 - 20372380
Alignment:
Q  1 atagagaaaagtggtcaaaatttgaggtatgacata 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  20372345 atagagaaaagtggtcaaaatttggggtatgacata 20372380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 14582958 - 14582925
Alignment:
Q  1 atagagaaaagtggtcaaaatttgaggtatgaca 34  Q
    |||||||||||||||||||||||| |||||||||    
T  14582958 atagagaaaagtggtcaaaatttggggtatgaca 14582925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 15944589 - 15944622
Alignment:
Q  1 atagagaaaagtggtcaaaatttgaggtatgaca 34  Q
    |||||||||||||||||||||||| |||||||||    
T  15944589 atagagaaaagtggtcaaaatttggggtatgaca 15944622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 15953104 - 15953137
Alignment:
Q  1 atagagaaaagtggtcaaaatttgaggtatgaca 34  Q
    |||||||||||||||||||||||| |||||||||    
T  15953104 atagagaaaagtggtcaaaatttggggtatgaca 15953137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 17687430 - 17687463
Alignment:
Q  1 atagagaaaagtggtcaaaatttgaggtatgaca 34  Q
    |||||||||||||||||||||||| |||||||||    
T  17687430 atagagaaaagtggtcaaaatttggggtatgaca 17687463  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 20621551 - 20621518
Alignment:
Q  1 atagagaaaagtggtcaaaatttgaggtatgaca 34  Q
    |||||||||||||||||||||||| |||||||||    
T  20621551 atagagaaaagtggtcaaaatttggggtatgaca 20621518  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 25483634 - 25483601
Alignment:
Q  1 atagagaaaagtggtcaaaatttgaggtatgaca 34  Q
    |||||||||||||||||||||||| |||||||||    
T  25483634 atagagaaaagtggtcaaaatttggggtatgaca 25483601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 25491240 - 25491207
Alignment:
Q  1 atagagaaaagtggtcaaaatttgaggtatgaca 34  Q
    |||||||||||||||||||||||| |||||||||    
T  25491240 atagagaaaagtggtcaaaatttggggtatgaca 25491207  T

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Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 35138626 - 35138593
Alignment:
Q  1 atagagaaaagtggtcaaaatttgaggtatgaca 34  Q
    |||||||||||||||||||||||| |||||||||    
T  35138626 atagagaaaagtggtcaaaatttggggtatgaca 35138593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 35146962 - 35146929
Alignment:
Q  1 atagagaaaagtggtcaaaatttgaggtatgaca 34  Q
    |||||||||||||||||||||||| |||||||||    
T  35146962 atagagaaaagtggtcaaaatttggggtatgaca 35146929  T

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Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 41233876 - 41233909
Alignment:
Q  1 atagagaaaagtggtcaaaatttgaggtatgaca 34  Q
    |||||||||||||||||||||||| |||||||||    
T  41233876 atagagaaaagtggtcaaaatttggggtatgaca 41233909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 42249487 - 42249520
Alignment:
Q  1 atagagaaaagtggtcaaaatttgaggtatgaca 34  Q
    |||||||||||||||||||||||| |||||||||    
T  42249487 atagagaaaagtggtcaaaatttggggtatgaca 42249520  T

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Target: scaffold0048 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 7661 - 7695
Alignment:
Q  1 atagagaaaagtggtcaaaatttgaggtatgacat 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  7661 atagagaaaagtggtcaaaatttggggtatgacat 7695  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 5004094 - 5004060
Alignment:
Q  1 atagagaaaagtggtcaaaatttgaggtatgacat 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  5004094 atagagaaaagtggtcaaaatttggggtatgacat 5004060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 5489151 - 5489185
Alignment:
Q  1 atagagaaaagtggtcaaaatttgaggtatgacat 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  5489151 atagagaaaagtggtcaaaatttggggtatgacat 5489185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 25550328 - 25550294
Alignment:
Q  1 atagagaaaagtggtcaaaatttgaggtatgacat 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  25550328 atagagaaaagtggtcaaaatttggggtatgacat 25550294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 35091708 - 35091742
Alignment:
Q  1 atagagaaaagtggtcaaaatttgaggtatgacat 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  35091708 atagagaaaagtggtcaaaatttggggtatgacat 35091742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 5994732 - 5994699
Alignment:
Q  1 atagagaaaagtggtcaaaatttgaggtatgaca 34  Q
    |||||||||||||||||||||||| |||||||||    
T  5994732 atagagaaaagtggtcaaaatttggggtatgaca 5994699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 13490226 - 13490193
Alignment:
Q  1 atagagaaaagtggtcaaaatttgaggtatgaca 34  Q
    |||||||||||||||||||||||| |||||||||    
T  13490226 atagagaaaagtggtcaaaatttggggtatgaca 13490193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 23925368 - 23925335
Alignment:
Q  1 atagagaaaagtggtcaaaatttgaggtatgaca 34  Q
    |||||||||||||||||||||||| |||||||||    
T  23925368 atagagaaaagtggtcaaaatttggggtatgaca 23925335  T

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Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 30824561 - 30824594
Alignment:
Q  1 atagagaaaagtggtcaaaatttgaggtatgaca 34  Q
    |||||||||||||||||||||||| |||||||||    
T  30824561 atagagaaaagtggtcaaaatttggggtatgaca 30824594  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 28470249 - 28470283
Alignment:
Q  1 atagagaaaagtggtcaaaatttgaggtatgacat 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  28470249 atagagaaaagtggtcaaaatttggggtatgacat 28470283  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 50824385 - 50824351
Alignment:
Q  1 atagagaaaagtggtcaaaatttgaggtatgacat 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  50824385 atagagaaaagtggtcaaaatttggggtatgacat 50824351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 50851475 - 50851509
Alignment:
Q  1 atagagaaaagtggtcaaaatttgaggtatgacat 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  50851475 atagagaaaagtggtcaaaatttggggtatgacat 50851509  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 30508 - 30541
Alignment:
Q  1 atagagaaaagtggtcaaaatttgaggtatgaca 34  Q
    |||||||||||||||||||||||| |||||||||    
T  30508 atagagaaaagtggtcaaaatttggggtatgaca 30541  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 8197728 - 8197761
Alignment:
Q  1 atagagaaaagtggtcaaaatttgaggtatgaca 34  Q
    |||||||||||||||||||||||| |||||||||    
T  8197728 atagagaaaagtggtcaaaatttggggtatgaca 8197761  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 14538637 - 14538670
Alignment:
Q  1 atagagaaaagtggtcaaaatttgaggtatgaca 34  Q
    |||||||||||||||||||||||| |||||||||    
T  14538637 atagagaaaagtggtcaaaatttggggtatgaca 14538670  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 17628298 - 17628265
Alignment:
Q  1 atagagaaaagtggtcaaaatttgaggtatgaca 34  Q
    |||||||||||||||||||||||| |||||||||    
T  17628298 atagagaaaagtggtcaaaatttggggtatgaca 17628265  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 17919232 - 17919199
Alignment:
Q  1 atagagaaaagtggtcaaaatttgaggtatgaca 34  Q
    |||||||||||||||||||||||| |||||||||    
T  17919232 atagagaaaagtggtcaaaatttggggtatgaca 17919199  T

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Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 27341367 - 27341400
Alignment:
Q  1 atagagaaaagtggtcaaaatttgaggtatgaca 34  Q
    |||||||||||||||||||||||| |||||||||    
T  27341367 atagagaaaagtggtcaaaatttggggtatgaca 27341400  T

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Target: scaffold0991 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0991
Description:

Target: scaffold0991; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 405 - 438
Alignment:
Q  1 atagagaaaagtggtcaaaatttgaggtatgaca 34  Q
    |||||||||||||||||||||||| |||||||||    
T  405 atagagaaaagtggtcaaaatttggggtatgaca 438  T

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Target: scaffold0497 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0497
Description:

Target: scaffold0497; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 11026 - 10993
Alignment:
Q  1 atagagaaaagtggtcaaaatttgaggtatgaca 34  Q
    |||||||||||||||||||||||| |||||||||    
T  11026 atagagaaaagtggtcaaaatttggggtatgaca 10993  T

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Target: scaffold0431 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0431
Description:

Target: scaffold0431; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 172 - 139
Alignment:
Q  1 atagagaaaagtggtcaaaatttgaggtatgaca 34  Q
    |||||||||||||||||||||||| |||||||||    
T  172 atagagaaaagtggtcaaaatttggggtatgaca 139  T

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Target: scaffold0156 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0156
Description:

Target: scaffold0156; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 35388 - 35421
Alignment:
Q  1 atagagaaaagtggtcaaaatttgaggtatgaca 34  Q
    |||||||||||||||||||||||| |||||||||    
T  35388 atagagaaaagtggtcaaaatttggggtatgaca 35421  T

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Target: scaffold0111 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0111
Description:

Target: scaffold0111; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 33068 - 33035
Alignment:
Q  1 atagagaaaagtggtcaaaatttgaggtatgaca 34  Q
    |||||||||||||||||||||||| |||||||||    
T  33068 atagagaaaagtggtcaaaatttggggtatgaca 33035  T

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Target: scaffold0083 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 15846 - 15813
Alignment:
Q  1 atagagaaaagtggtcaaaatttgaggtatgaca 34  Q
    |||||||||||||||||||||||| |||||||||    
T  15846 atagagaaaagtggtcaaaatttggggtatgaca 15813  T

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Target: scaffold0039 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 40865 - 40898
Alignment:
Q  1 atagagaaaagtggtcaaaatttgaggtatgaca 34  Q
    |||||||||||||||||||||||| |||||||||    
T  40865 atagagaaaagtggtcaaaatttggggtatgaca 40898  T

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Target: scaffold0016 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 23497 - 23464
Alignment:
Q  1 atagagaaaagtggtcaaaatttgaggtatgaca 34  Q
    |||||||||||||||||||||||| |||||||||    
T  23497 atagagaaaagtggtcaaaatttggggtatgaca 23464  T

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Target: scaffold0015 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 192561 - 192528
Alignment:
Q  1 atagagaaaagtggtcaaaatttgaggtatgaca 34  Q
    |||||||||||||||||||||||| |||||||||    
T  192561 atagagaaaagtggtcaaaatttggggtatgaca 192528  T

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Target: scaffold0002 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 121261 - 121228
Alignment:
Q  1 atagagaaaagtggtcaaaatttgaggtatgaca 34  Q
    |||||||||||||||||||||||| |||||||||    
T  121261 atagagaaaagtggtcaaaatttggggtatgaca 121228  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 4582237 - 4582204
Alignment:
Q  1 atagagaaaagtggtcaaaatttgaggtatgaca 34  Q
    ||||||||||||||||||||||| ||||||||||    
T  4582237 atagagaaaagtggtcaaaatttaaggtatgaca 4582204  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 17664672 - 17664705
Alignment:
Q  1 atagagaaaagtggtcaaaatttgaggtatgaca 34  Q
    |||||||||||||||||||||||| |||||||||    
T  17664672 atagagaaaagtggtcaaaatttggggtatgaca 17664705  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 17683828 - 17683861
Alignment:
Q  1 atagagaaaagtggtcaaaatttgaggtatgaca 34  Q
    |||||||||||||||||||||||| |||||||||    
T  17683828 atagagaaaagtggtcaaaatttggggtatgaca 17683861  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 17973598 - 17973565
Alignment:
Q  1 atagagaaaagtggtcaaaatttgaggtatgaca 34  Q
    |||||||||||||||||||||||| |||||||||    
T  17973598 atagagaaaagtggtcaaaatttggggtatgaca 17973565  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 26873636 - 26873669
Alignment:
Q  1 atagagaaaagtggtcaaaatttgaggtatgaca 34  Q
    |||||||||||||||||||||||| |||||||||    
T  26873636 atagagaaaagtggtcaaaatttggggtatgaca 26873669  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 26876086 - 26876119
Alignment:
Q  1 atagagaaaagtggtcaaaatttgaggtatgaca 34  Q
    |||||||||||||||||||||||| |||||||||    
T  26876086 atagagaaaagtggtcaaaatttggggtatgaca 26876119  T

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Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 30938315 - 30938282
Alignment:
Q  1 atagagaaaagtggtcaaaatttgaggtatgaca 34  Q
    |||||||||||||||||||||||| |||||||||    
T  30938315 atagagaaaagtggtcaaaatttggggtatgaca 30938282  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 8094314 - 8094347
Alignment:
Q  1 atagagaaaagtggtcaaaatttgaggtatgaca 34  Q
    |||||||||||||||||||||||| |||||||||    
T  8094314 atagagaaaagtggtcaaaatttggggtatgaca 8094347  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 8103120 - 8103153
Alignment:
Q  1 atagagaaaagtggtcaaaatttgaggtatgaca 34  Q
    |||||||||||||||||||||||| |||||||||    
T  8103120 atagagaaaagtggtcaaaatttggggtatgaca 8103153  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 10638361 - 10638328
Alignment:
Q  1 atagagaaaagtggtcaaaatttgaggtatgaca 34  Q
    |||||||||||||||||||||||| |||||||||    
T  10638361 atagagaaaagtggtcaaaatttggggtatgaca 10638328  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 12428510 - 12428543
Alignment:
Q  1 atagagaaaagtggtcaaaatttgaggtatgaca 34  Q
    |||||||||||||||||||||||| |||||||||    
T  12428510 atagagaaaagtggtcaaaatttggggtatgaca 12428543  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 12996509 - 12996476
Alignment:
Q  1 atagagaaaagtggtcaaaatttgaggtatgaca 34  Q
    |||||||||||||||||||||||| |||||||||    
T  12996509 atagagaaaagtggtcaaaatttggggtatgaca 12996476  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 21532336 - 21532369
Alignment:
Q  1 atagagaaaagtggtcaaaatttgaggtatgaca 34  Q
    |||||||||||||||||||||||| |||||||||    
T  21532336 atagagaaaagtggtcaaaatttggggtatgaca 21532369  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 27343723 - 27343756
Alignment:
Q  1 atagagaaaagtggtcaaaatttgaggtatgaca 34  Q
    |||||||||||||||||||||||| |||||||||    
T  27343723 atagagaaaagtggtcaaaatttggggtatgaca 27343756  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 52295637 - 52295604
Alignment:
Q  1 atagagaaaagtggtcaaaatttgaggtatgaca 34  Q
    |||||||||||||||||||||||| |||||||||    
T  52295637 atagagaaaagtggtcaaaatttggggtatgaca 52295604  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 21498930 - 21498963
Alignment:
Q  1 atagagaaaagtggtcaaaatttgaggtatgaca 34  Q
    |||||||||||||||||||||||| |||||||||    
T  21498930 atagagaaaagtggtcaaaatttggggtatgaca 21498963  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 31539987 - 31539954
Alignment:
Q  1 atagagaaaagtggtcaaaatttgaggtatgaca 34  Q
    |||||||||||||||||||||||| |||||||||    
T  31539987 atagagaaaagtggtcaaaatttggggtatgaca 31539954  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 31548556 - 31548523
Alignment:
Q  1 atagagaaaagtggtcaaaatttgaggtatgaca 34  Q
    |||||||||||||||||||||||| |||||||||    
T  31548556 atagagaaaagtggtcaaaatttggggtatgaca 31548523  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 35104096 - 35104129
Alignment:
Q  1 atagagaaaagtggtcaaaatttgaggtatgaca 34  Q
    |||||||||||||||||||||||| |||||||||    
T  35104096 atagagaaaagtggtcaaaatttggggtatgaca 35104129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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