View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19305_high_10 (Length: 586)

Name: NF19305_high_10
Description: NF19305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19305_high_10
NF19305_high_10
[»] chr3 (19 HSPs)
chr3 (49-526)||(1639181-1639657)
chr3 (50-215)||(14264882-14265050)
chr3 (49-178)||(13626320-13626450)
chr3 (49-208)||(19234530-19234692)
chr3 (76-215)||(7953539-7953682)
chr3 (52-210)||(17370275-17370435)
chr3 (52-152)||(6465052-6465153)
chr3 (49-220)||(48088266-48088441)
chr3 (49-152)||(25577301-25577405)
chr3 (49-179)||(37280829-37280959)
chr3 (52-146)||(39417672-39417767)
chr3 (64-208)||(8634123-8634270)
chr3 (52-179)||(43687605-43687732)
chr3 (74-206)||(53561233-53561369)
chr3 (49-151)||(36722071-36722173)
chr3 (57-155)||(29635503-29635602)
chr3 (293-382)||(7634451-7634541)
chr3 (52-155)||(3163217-3163321)
chr3 (329-377)||(43613617-43613665)
[»] chr4 (22 HSPs)
chr4 (50-260)||(31930994-31931208)
chr4 (50-235)||(42420474-42420662)
chr4 (49-214)||(18411935-18412103)
chr4 (50-225)||(13850199-13850377)
chr4 (64-179)||(17210648-17210764)
chr4 (49-215)||(14331416-14331584)
chr4 (49-215)||(24606077-24606246)
chr4 (50-211)||(13865740-13865904)
chr4 (64-215)||(31323658-31323811)
chr4 (49-152)||(31825324-31825428)
chr4 (49-152)||(31825570-31825674)
chr4 (49-179)||(27759013-27759144)
chr4 (49-142)||(20779649-20779743)
chr4 (49-145)||(44099879-44099976)
chr4 (49-152)||(32938576-32938680)
chr4 (64-179)||(21710919-21711035)
chr4 (50-145)||(23125248-23125345)
chr4 (50-126)||(20759714-20759792)
chr4 (50-126)||(20766105-20766183)
chr4 (77-174)||(39039485-39039583)
chr4 (63-152)||(49063371-49063461)
chr4 (52-155)||(12587153-12587257)
[»] chr1 (23 HSPs)
chr1 (49-260)||(21760951-21761164)
chr1 (49-260)||(15470976-15471194)
chr1 (52-215)||(25804143-25804309)
chr1 (49-237)||(48707492-48707682)
chr1 (49-220)||(48569125-48569300)
chr1 (49-152)||(21485347-21485451)
chr1 (50-289)||(26088731-26088969)
chr1 (49-152)||(49599570-49599674)
chr1 (49-179)||(3658022-3658153)
chr1 (49-155)||(34335728-34335835)
chr1 (49-152)||(41875599-41875703)
chr1 (49-198)||(27799099-27799250)
chr1 (49-151)||(5764594-5764697)
chr1 (49-214)||(27259390-27259557)
chr1 (49-208)||(18169358-18169519)
chr1 (63-152)||(39224935-39225025)
chr1 (274-383)||(21761151-21761260)
chr1 (49-152)||(18841839-18841944)
chr1 (273-383)||(15470880-15470990)
chr1 (51-206)||(12025646-12025803)
chr1 (293-382)||(26088618-26088707)
chr1 (49-220)||(46182264-46182441)
chr1 (172-220)||(49599680-49599728)
[»] chr5 (19 HSPs)
chr5 (49-214)||(28717537-28717707)
chr5 (49-260)||(10975234-10975447)
chr5 (49-215)||(2598678-2598847)
chr5 (52-179)||(25361172-25361300)
chr5 (49-212)||(15798667-15798834)
chr5 (50-215)||(4113804-4113973)
chr5 (50-145)||(12804962-12805058)
chr5 (49-179)||(7081655-7081785)
chr5 (56-152)||(23229324-23229422)
chr5 (50-145)||(36317622-36317721)
chr5 (49-134)||(16418676-16418761)
chr5 (71-179)||(33370006-33370115)
chr5 (50-152)||(12742140-12742239)
chr5 (79-145)||(22858328-22858396)
chr5 (273-382)||(28717348-28717457)
chr5 (272-318)||(19550923-19550969)
chr5 (273-379)||(23229501-23229606)
chr5 (295-383)||(15233750-15233838)
chr5 (50-151)||(17196056-17196159)
[»] chr7 (16 HSPs)
chr7 (49-207)||(27318412-27318573)
chr7 (56-318)||(31266759-31267026)
chr7 (49-215)||(39477756-39477924)
chr7 (49-211)||(8726928-8727095)
chr7 (52-146)||(21615474-21615569)
chr7 (72-220)||(18236893-18237043)
chr7 (49-206)||(7414582-7414743)
chr7 (50-179)||(13798685-13798815)
chr7 (50-145)||(28065817-28065914)
chr7 (50-145)||(11823879-11823976)
chr7 (49-152)||(40592126-40592230)
chr7 (90-207)||(16887077-16887196)
chr7 (57-142)||(12082462-12082549)
chr7 (52-142)||(18146354-18146446)
chr7 (49-109)||(47268346-47268407)
chr7 (272-316)||(7414790-7414834)
[»] chr2 (18 HSPs)
chr2 (49-237)||(26618053-26618244)
chr2 (49-210)||(21557333-21557497)
chr2 (49-205)||(40500770-40500929)
chr2 (49-152)||(20147513-20147617)
chr2 (49-152)||(29110561-29110665)
chr2 (49-179)||(16706191-16706322)
chr2 (64-215)||(32734113-32734267)
chr2 (49-155)||(5307063-5307170)
chr2 (64-152)||(29905975-29906064)
chr2 (50-133)||(18878056-18878141)
chr2 (49-179)||(42241808-42241938)
chr2 (327-383)||(5726842-5726898)
chr2 (49-122)||(37058464-37058538)
chr2 (64-144)||(27651379-27651461)
chr2 (293-383)||(11804919-11805009)
chr2 (49-88)||(20530344-20530383)
chr2 (328-383)||(34233636-34233691)
chr2 (274-354)||(26618254-26618334)
[»] chr6 (14 HSPs)
chr6 (50-254)||(24559282-24559496)
chr6 (49-220)||(800489-800664)
chr6 (52-262)||(20243598-20243804)
chr6 (52-262)||(22137582-22137788)
chr6 (52-236)||(5570582-5570767)
chr6 (50-146)||(3098084-3098182)
chr6 (49-210)||(34208260-34208425)
chr6 (49-198)||(19242284-19242436)
chr6 (54-149)||(18744543-18744640)
chr6 (49-131)||(12026634-12026717)
chr6 (49-131)||(12033554-12033637)
chr6 (122-211)||(4286548-4286639)
chr6 (85-151)||(446093-446159)
chr6 (111-145)||(28050812-28050846)
[»] chr8 (7 HSPs)
chr8 (64-215)||(40414066-40414220)
chr8 (49-152)||(16575090-16575194)
chr8 (52-211)||(14998692-14998855)
chr8 (50-179)||(22843916-22844046)
chr8 (63-145)||(43692545-43692628)
chr8 (49-88)||(32109527-32109566)
chr8 (75-215)||(12785816-12785958)
[»] scaffold0489 (1 HSPs)
scaffold0489 (49-213)||(7491-7657)
[»] scaffold0004 (1 HSPs)
scaffold0004 (49-145)||(39325-39422)
[»] scaffold0294 (1 HSPs)
scaffold0294 (49-131)||(537-620)
[»] scaffold0121 (1 HSPs)
scaffold0121 (52-208)||(4680-4833)
[»] scaffold0027 (1 HSPs)
scaffold0027 (272-384)||(36152-36264)
[»] scaffold0591 (1 HSPs)
scaffold0591 (49-131)||(2217-2300)


Alignment Details
Target: chr3 (Bit Score: 394; Significance: 0; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 49 - 526
Target Start/End: Original strand, 1639181 - 1639657
Alignment:
Q  49 ttctaatttaagaggaaaaatttaacatataaacataaaagttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaacct 148  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |    
T  1639181 ttctaatttaagaggaaaaatttaacatataaacataaaagttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaattt 1639280  T
Q  149 gaagaaaataaggatttggttaatttgagagtttttggagatttgagatgagaaatgaggaaatgagctgctgtctgacctttaaaagggtacacaatgt 248  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||    
T  1639281 gaagaaaataaggatttg-ttaatttgagagtttttggagatttgagatgagaaatgagaaaatgagctgctgtctgacctttaaaagggcacacaatgt 1639379  T
Q  249 gacttaactcacattggcctttggcgtgatttaactcacgctgatttaacacatgtgtgacttaactcacactgggaacattttcggaagtttgattgga 348  Q
    | |||||||||| ||||||||  |||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||  |||||    
T  1639380 ggcttaactcacgttggccttaagcgtgacttaactcacgctgatttaacacatgcgtgacttaactcacactgggaacatttttggaagtttagttgga 1639479  T
Q  349 agtgagtaaaacttgttggaagaagagcatttttcggcacaatatatggatgacacatcaatgacatctaagaggcttcatgttacctacaattaatgaa 448  Q
      |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||    
T  1639480 tctgagtaaaacttgttggaagaagagcattttttggcacaatatatggatgacacatcaatgacatctaagagggttcatgttacctacaattaatcaa 1639579  T
Q  449 taattttagcaaccatttggacattaagtgactgtgttcaagggccattttctaagacatattttaccaactttcatt 526  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1639580 tatttttagcaaccatttggacattaagtgactgtgttcaagggccattttctaagacatattttaccaactttcatt 1639657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 50 - 215
Target Start/End: Complemental strand, 14265050 - 14264882
Alignment:
Q  50 tctaatttaagaggaaaaatttaacatataaacataaaag-ttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaacct 148  Q
    ||||||||||||| |||||| ||||||||||||||||||| |||| | | ||||||||||| ||||||||||||| |||||||||||| ||||||||| |    
T  14265050 tctaatttaagagaaaaaatctaacatataaacataaaagcttaacggtgtttgattatgaaaacttacttgttaatggagtgttgttagatttgaactt 14264951  T
Q  149 gaagaaaataaggatttggttaattt--gagagtttttggagatttgagatgagaaatgaggaaatgag 215  Q
    |||| || |   ||||||| | ||||  ||||| |||||||||||| ||||||||||||||||||||||    
T  14264950 gaaggaatttttgatttgggtgatttgagagagattttggagattttagatgagaaatgaggaaatgag 14264882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 49 - 178
Target Start/End: Complemental strand, 13626450 - 13626320
Alignment:
Q  49 ttctaatttaagaggaaaaatttaacatataaacataaaa-gttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaacc 147  Q
    ||||||||||||||||||||| |||||||||||||||||| ||||||| | ||||||||| | |||||||||||||||| ||||||||| |||||||||     
T  13626450 ttctaatttaagaggaaaaatctaacatataaacataaaatgttaatggtgtttgattataaaaacttacttgttattgaagtgttgtttgatttgaact 13626351  T
Q  148 tgaagaaaataaggatttggttaatttgaga 178  Q
    | |||||| || |||||||||| ||||||||    
T  13626350 ttaagaaattagggatttggttgatttgaga 13626320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 49 - 208
Target Start/End: Complemental strand, 19234692 - 19234530
Alignment:
Q  49 ttctaatttaagaggaaaaatttaacatataaacataaaa-gttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaacc 147  Q
    |||||||||||||| |||||| ||| |||||||||||||| ||||||| | ||||||||||| ||||||||||||| |||||||| ||| |||||||||     
T  19234692 ttctaatttaagagaaaaaatctaagatataaacataaaatgttaatggtgtttgattatgaaaacttacttgttaatggagtgtggtttgatttgaact 19234593  T
Q  148 tgaagaaaataaggatttggttaatttgagag--tttttggagatttgagatgagaaatgagg 208  Q
    ||||  || |  |||||||| |||||||||||   |||| ||||||| |||||||||||||||    
T  19234592 tgaaagaattttggatttgggtaatttgagagaaatttttgagatttaagatgagaaatgagg 19234530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 76 - 215
Target Start/End: Complemental strand, 7953682 - 7953539
Alignment:
Q  76 tataaacataaaag-ttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaacctgaagaaaataaggatttggttaattt 174  Q
    |||||||||||||| |||||| | ||||||||||| |||||||||||||||||||||||||| ||||||||| ||||  || |  |||||||| | ||||    
T  7953682 tataaacataaaaggttaatggtgtttgattatgaaaacttacttgttattggagtgttgtttgatttgaacttgaacgaattttggatttgggtgattt 7953583  T
Q  175 gagag---tttttggagatttgagatgagaaatgaggaaatgag 215  Q
    |||||   ||||| ||||||| ||||||||||||||||||||||    
T  7953582 gagagagattttttgagattttagatgagaaatgaggaaatgag 7953539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 52 - 210
Target Start/End: Complemental strand, 17370435 - 17370275
Alignment:
Q  52 taatttaagaggaaaaatttaacatataaacataaaa-gttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaacctga 150  Q
    |||||||||||||||||| ||||||||||| |||||| ||||||| | ||||||||||| |||||||||||||||||||||||| | ||||||||| | |    
T  17370435 taatttaagaggaaaaatctaacatataaaaataaaatgttaatggtgtttgattatgaaaacttacttgttattggagtgttgattgatttgaacttaa 17370336  T
Q  151 agaaaataagga-tttggttaattt--gagagtttttggagatttgagatgagaaatgaggaa 210  Q
    ||||| |  ||| ||||| | ||||  |||||||||| |||||||  ||||||||||||||||    
T  17370335 agaaatt--ggagtttggatgatttgagagagtttttagagatttaggatgagaaatgaggaa 17370275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 52 - 152
Target Start/End: Original strand, 6465052 - 6465153
Alignment:
Q  52 taatttaagaggaaaaatttaacatataaacataaaag-ttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaacctga 150  Q
    ||||||||||| |||| | ||||||||||||||||||| |||||| | ||||||||||| |||||||||||||||||||||||||| ||||||||| |||    
T  6465052 taatttaagagaaaaagtctaacatataaacataaaaggttaatgctgtttgattatgaaaacttacttgttattggagtgttgtttgatttgaacttga 6465151  T
Q  151 ag 152  Q
    ||    
T  6465152 ag 6465153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 49 - 220
Target Start/End: Original strand, 48088266 - 48088441
Alignment:
Q  49 ttctaatttaagaggaaaaatttaacatataaacataaaa--gttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaac 146  Q
    |||||||| ||||| |||||| ||||||||||||||||||  ||||||| | |||||| |||| ||||||||||||||||||||||||||  ||||||||    
T  48088266 ttctaattcaagagaaaaaatctaacatataaacataaaaaggttaatggtgtttgatcatgaaaacttacttgttattggagtgttgtttaatttgaac 48088365  T
Q  147 ctgaagaaaataaggatttggttaattt--gagagtttttggagatttgagatgagaaatgaggaaatgagctgct 220  Q
     ||||| || |  | |||||  | ||||  ||||| |||| ||||||| ||||||||||||| |||||||| ||||    
T  48088366 ttgaaggaattttgaatttgagtgatttgagagagatttttgagattttagatgagaaatgatgaaatgaggtgct 48088441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 49 - 152
Target Start/End: Original strand, 25577301 - 25577405
Alignment:
Q  49 ttctaatttaagaggaaaaatttaacatataaacataaaag-ttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaacc 147  Q
    |||||||||||||| |||||| ||||||||||||||||||| |||||| | |||||| |||| |||||| ||||||||||||||||||| |||||||||     
T  25577301 ttctaatttaagagaaaaaatctaacatataaacataaaaggttaatggtgtttgatcatgaaaacttatttgttattggagtgttgtttgatttgaact 25577400  T
Q  148 tgaag 152  Q
    |||||    
T  25577401 tgaag 25577405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 49 - 179
Target Start/End: Complemental strand, 37280959 - 37280829
Alignment:
Q  49 ttctaatttaagaggaaaaatttaacatataaacataaaag-ttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaacc 147  Q
    |||||||||| ||| |||||| ||||||||||||||||||| |||||| | |||||| |||| |||||||||||||||||||||||||| |||||||||     
T  37280959 ttctaatttatgag-aaaaatataacatataaacataaaaggttaatggtgtttgatcatgaaaacttacttgttattggagtgttgtttgatttgaact 37280861  T
Q  148 tgaagaaaataaggatttggttaatttgagag 179  Q
    ||||| || |  |||||||| | |||||||||    
T  37280860 tgaaggaattttggatttgggtgatttgagag 37280829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 52 - 146
Target Start/End: Original strand, 39417672 - 39417767
Alignment:
Q  52 taatttaagaggaaaaatttaacatataaacataaaag-ttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaac 146  Q
    ||||||||||| |||||| ||||||||||||||||||| |||||| | |||||| |||| |||||||||||||||||||||||||| |||||||||    
T  39417672 taatttaagagaaaaaatctaacatataaacataaaaggttaatggtgtttgatcatgaaaacttacttgttattggagtgttgtttgatttgaac 39417767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 64 - 208
Target Start/End: Original strand, 8634123 - 8634270
Alignment:
Q  64 aaaaatttaacatataaacataaaagttaa-tgatatttgattatgataacttacttgttattggagtgttgttggatttgaacctgaagaaaataagga 162  Q
    |||||| ||||||||||||||||||| ||| |||| ||||||||||| ||||||||||| |||| ||||||||| ||||||||| |||||||  |  ||     
T  8634123 aaaaatctaacatataaacataaaaggtaaatgatgtttgattatgaaaacttacttgtgattgaagtgttgtttgatttgaacttgaagaatttttggg 8634222  T
Q  163 tttggttaattt--gagagtttttggagatttgagatgagaaatgagg 208  Q
    ||||| | ||||  ||||| |||| ||||||| |||||||||||||||    
T  8634223 tttgggtgatttgagagagatttttgagattttagatgagaaatgagg 8634270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 52 - 179
Target Start/End: Complemental strand, 43687732 - 43687605
Alignment:
Q  52 taatttaagaggaaaaatttaacatataaacataaaa-gttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaacctga 150  Q
    |||||||| ||||||||| |||||||||||||||||| ||||||||| ||||||||| | || |||||| |||||||||||||||| ||||||||| |||    
T  43687732 taatttaaaaggaaaaatctaacatataaacataaaatgttaatgatgtttgattatta-aagttactttttattggagtgttgtttgatttgaacttga 43687634  T
Q  151 agaaaataaggatttggttaatttgagag 179  Q
    || || |  | |||||||| |||||||||    
T  43687633 aggaattttgaatttggttgatttgagag 43687605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 74 - 206
Target Start/End: Complemental strand, 53561369 - 53561233
Alignment:
Q  74 catataaacataaaag-ttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaacctgaagaaaataaggatttggttaat 172  Q
    |||||||| ||||||| |||||||| |||||| |||| |||| ||||||||||||||||||||| ||||||||| ||||| || |  |||||||| | ||    
T  53561369 catataaatataaaaggttaatgatgtttgatcatgaaaactcacttgttattggagtgttgtttgatttgaacttgaaggaattttggatttgggtgat 53561270  T
Q  173 ttgagag---tttttggagatttgagatgagaaatga 206  Q
    |||||||   ||||| ||||||| |||||||||||||    
T  53561269 ttgagagagattttttgagattttagatgagaaatga 53561233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 49 - 151
Target Start/End: Original strand, 36722071 - 36722173
Alignment:
Q  49 ttctaatttaagaggaaaaatttaacatataaacataaaa-gttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaacc 147  Q
    |||||||||| ||| |||||| |||||||||||||||||| ||||||| | |||||| |||| |||||||||||||||||||||||||| |||| ||||     
T  36722071 ttctaatttatgag-aaaaatataacatataaacataaaatgttaatggtgtttgatcatgaaaacttacttgttattggagtgttgtttgattcgaact 36722169  T
Q  148 tgaa 151  Q
    ||||    
T  36722170 tgaa 36722173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 57 - 155
Target Start/End: Original strand, 29635503 - 29635602
Alignment:
Q  57 taagaggaaaaatttaacatataaacataaaagtt-aatgatatttgattatgataacttacttgttattggagtgttgttggatttgaacctgaagaaa 155  Q
    ||||||||||||| |||||||||||||||||| || |||| || |||||||| | ||||||||| ||||||||||||||   ||||||||  ||||||||    
T  29635503 taagaggaaaaatgtaacatataaacataaaatttcaatggtacttgattataaaaacttactttttattggagtgttgactgatttgaatttgaagaaa 29635602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 293 - 382
Target Start/End: Original strand, 7634451 - 7634541
Alignment:
Q  293 tttaacacatgtgtgacttaactcacactgggaacattttcggaagtttgattggaagtgagtaaaacttgttggaaga--agagcattttt 382  Q
    ||||||| |||||||||||||||||| ||||    ||||||||||||||| |||| |||||| |||||||||||| |||  |||||||||||    
T  7634451 tttaacatatgtgtgacttaactcacgctggaggtattttcggaagtttggttgg-agtgagaaaaacttgttgggagatcagagcattttt 7634541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 52 - 155
Target Start/End: Original strand, 3163217 - 3163321
Alignment:
Q  52 taatttaagaggaaaaatttaacatataaacataaaa-gttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaacctga 150  Q
    |||||||||| ||||||| |||||||||||||||||| || | || || | |||||||| ||||| |||||||||  |||| || | ||||||||  |||    
T  3163217 taatttaagaagaaaaatgtaacatataaacataaaatgtaattggtaatggattatgaaaacttccttgttattaaagtggtgattgatttgaatttga 3163316  T
Q  151 agaaa 155  Q
    |||||    
T  3163317 agaaa 3163321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 329 - 377
Target Start/End: Complemental strand, 43613665 - 43613617
Alignment:
Q  329 ttttcggaagtttgattggaagtgagtaaaacttgttggaagaagagca 377  Q
    |||||||||||||| ||| || |||| ||||| ||||||||||||||||    
T  43613665 ttttcggaagtttggttgaaaatgagcaaaacgtgttggaagaagagca 43613617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 116; Significance: 1e-58; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 50 - 260
Target Start/End: Complemental strand, 31931208 - 31930994
Alignment:
Q  50 tctaatttaagaggaaaaatttaacatataaacataaaag-ttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaacct 148  Q
    ||||||| |||||||||||| ||||||||||||||||||| |||||| | ||||||||||| |||||||||||||||||||||||||||||||||||| |    
T  31931208 tctaattgaagaggaaaaatctaacatataaacataaaaggttaatggtgtttgattatgaaaacttacttgttattggagtgttgttggatttgaactt 31931109  T
Q  149 gaagaaaataaggatttggttaattt--gagagtttttggagatttgagatgagaaatgaggaaatgagctgc-tgtctgacctttaaaagggtacacaa 245  Q
    ||||||| || |||||| ||| ||||  ||||||||||||||||||||||||||||||||||||||||| ||| ||| || |||||||||||  ||||      
T  31931108 gaagaaattagggatttcgttgatttgagagagtttttggagatttgagatgagaaatgaggaaatgagttgcttgtatggcctttaaaaggacacacgg 31931009  T
Q  246 tgtgacttaactcac 260  Q
     ||||||||||||||    
T  31931008 cgtgacttaactcac 31930994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 50 - 235
Target Start/End: Complemental strand, 42420662 - 42420474
Alignment:
Q  50 tctaatttaagaggaaaaatttaacatataaacataaaa--gttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaacc 147  Q
    |||||||||||||||||||| ||||||||||||||||||  ||||||| | ||||||||||| |||||||||||||||||| ||||||| |||||||||     
T  42420662 tctaatttaagaggaaaaatgtaacatataaacataaaaaggttaatggtgtttgattatgaaaacttacttgttattggaatgttgtttgatttgaact 42420563  T
Q  148 tgaagaaaataaggatttggttaattt--gagagtttttggagatttgagatgagaaatgaggaaatgagctgctgtctgacctttaaaa 235  Q
    |||||  |||  |||||||| | ||||  ||||| |||||||||||| ||||| |||||||| ||||  | | |||||||||||||||||    
T  42420562 tgaag-gaatttggatttgggtgatttgagagagattttggagattttagatgggaaatgagaaaatagggttctgtctgacctttaaaa 42420474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 49 - 214
Target Start/End: Complemental strand, 18412103 - 18411935
Alignment:
Q  49 ttctaatttaagaggaaaaatttaacatataaacataaaag-ttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaacc 147  Q
    |||||||||||||| |||||| ||||||||||||||||||| |||||| | ||||||||||| ||||||||||||| |||||||| ||| |||||||||     
T  18412103 ttctaatttaagagaaaaaatctaacatataaacataaaaggttaatggtgtttgattatgaaaacttacttgttaatggagtgtggtttgatttgaact 18412004  T
Q  148 tgaagaaaataaggatttggttaatttgagag--tttttggagatttgagatgagaaatgaggaaatga 214  Q
    |||||||| |  | |||||| |||||||||||   |||| ||||||| ||||| |||||||||||||||    
T  18412003 tgaagaaattttgaatttgggtaatttgagagaaatttttgagattttagatgggaaatgaggaaatga 18411935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 50 - 225
Target Start/End: Complemental strand, 13850377 - 13850199
Alignment:
Q  50 tctaatttaagaggaaaaatttaacatataaacataaaag-ttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaacct 148  Q
    ||||||||||||| |||||| ||||||||||||||||||| |||||| | ||||||||||| |||||||||||||  |||||| |||| ||||||||| |    
T  13850377 tctaatttaagagaaaaaatctaacatataaacataaaagcttaatggtgtttgattatgaaaacttacttgttaagggagtgatgtttgatttgaactt 13850278  T
Q  149 gaagaaaataaggatttggttaatttgagag--tttttggagatttgagatgagaaatgaggaaatgagctgctgtctg 225  Q
    |||| || |  |||||||| | |||||||||   |||||||||||| |||||| || |||||||||||| || ||||||    
T  13850277 gaaggaattttggatttgggtgatttgagagacattttggagattttagatgaaaagtgaggaaatgaggtgttgtctg 13850199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 64 - 179
Target Start/End: Complemental strand, 17210764 - 17210648
Alignment:
Q  64 aaaaatttaacatataaacataaaag-ttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaacctgaagaaaataagga 162  Q
    |||||| ||||||||||||||||||| |||||| | ||||||||||| |||||||||||||||||||||||||| ||||||||| |||||||| |  |||    
T  17210764 aaaaatctaacatataaacataaaaggttaatggtgtttgattatgaaaacttacttgttattggagtgttgtttgatttgaacttgaagaaattttgga 17210665  T
Q  163 tttggttaatttgagag 179  Q
    ||||| |||||||||||    
T  17210664 tttgggtaatttgagag 17210648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 49 - 215
Target Start/End: Original strand, 14331416 - 14331584
Alignment:
Q  49 ttctaatttaagaggaaaaatttaacatataaacataaaag-ttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaacc 147  Q
    |||||||||| ||| |||||| ||||||||||||||||||| |||||| | |||||| |||| |||||||||||||||||||||||||| |||||| |||    
T  14331416 ttctaatttatgag-aaaaatataacatataaacataaaaggttaatggtgtttgatcatgaaaacttacttgttattggagtgttgtttgatttggacc 14331514  T
Q  148 tgaagaaaataaggatttggttaattt--gagagtttttggagatttgagatgagaaatgaggaaatgag 215  Q
    ||||| || |   ||||||  | ||||  ||||| |||| ||||||| ||||||||||||||||||||||    
T  14331515 tgaaggaattttagatttgagtgatttgagagagatttttgagattttagatgagaaatgaggaaatgag 14331584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 49 - 215
Target Start/End: Complemental strand, 24606246 - 24606077
Alignment:
Q  49 ttctaatttaagaggaaaaatttaacatataaacataaaag-ttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaacc 147  Q
    |||||||||||||| |||||| ||||||||||||||||||| |||||  | ||||||||||| ||||||||||||||| |||||||||| |||||||||     
T  24606246 ttctaatttaagagaaaaaatctaacatataaacataaaaggttaattgtgtttgattatgaaaacttacttgttattagagtgttgtttgatttgaact 24606147  T
Q  148 tgaagaaaataaggatttggttaatttgag--agtttttggagatttgagatgagaaatgaggaaatgag 215  Q
    ||||| || |  |||||||  | ||| |||  || |||| ||||||| | ||||||||||||||||||||    
T  24606146 tgaaggaattttggatttgagtgattagagatagatttttgagattttatatgagaaatgaggaaatgag 24606077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 50 - 211
Target Start/End: Complemental strand, 13865904 - 13865740
Alignment:
Q  50 tctaatttaagaggaaaaatttaacatataaacataaaag-ttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaacct 148  Q
    ||||||||||||| |||||| ||||||||||||||||||| |||||| | ||||||||||| ||||||||||||| ||||||| |||| ||||| ||| |    
T  13865904 tctaatttaagagaaaaaatctaacatataaacataaaagcttaatggtgtttgattatgaaaacttacttgttaatggagtgatgtttgattttaactt 13865805  T
Q  149 gaagaaaataaggatttggttaattt--gagagtttttggagatttgagatgagaaatgaggaaa 211  Q
    |||| || |  |||||||| | ||||  ||||  |||||||||||| ||||||||| ||||||||    
T  13865804 gaaggaattttggatttgggtgatttaagagacattttggagattttagatgagaagtgaggaaa 13865740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 64 - 215
Target Start/End: Complemental strand, 31323811 - 31323658
Alignment:
Q  64 aaaaatttaacatataaacataaaagt-taatgatatttgattatgataacttacttgttattggagtgttgttggatttgaacctgaagaaaataagga 162  Q
    |||||| |||||||||||||||||||  ||||| | ||||||||||| ||||||||||||| |||||||||||| ||||||||  ||||| || |  |||    
T  31323811 aaaaatctaacatataaacataaaagcctaatggtgtttgattatgaaaacttacttgttaatggagtgttgtttgatttgaatttgaaggaattttgga 31323712  T
Q  163 tttggttaatt-tgagagtttttggagatttgagatgagaaatgaggaaatgag 215  Q
    ||||| | |||  ||||| |||||||||||| ||||||||||||||||||||||    
T  31323711 tttgggtgattgagagagattttggagattttagatgagaaatgaggaaatgag 31323658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 49 - 152
Target Start/End: Original strand, 31825324 - 31825428
Alignment:
Q  49 ttctaatttaagaggaaaaatttaacatataaacataaaag-ttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaacc 147  Q
    |||||||||||||| |||||| ||||||||||||||||||| |||||| | |||||| |||| |||||||||||||||||||||||||| |||||||||     
T  31825324 ttctaatttaagagaaaaaatctaacatataaacataaaaggttaatggtgtttgatcatgaaaacttacttgttattggagtgttgtttgatttgaact 31825423  T
Q  148 tgaag 152  Q
    |||||    
T  31825424 tgaag 31825428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 49 - 152
Target Start/End: Original strand, 31825570 - 31825674
Alignment:
Q  49 ttctaatttaagaggaaaaatttaacatataaacataaaag-ttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaacc 147  Q
    |||||||||||||| |||||| ||||||||||||||||||| |||||| | |||||| |||| |||||||||||||||||||||||||| |||||||||     
T  31825570 ttctaatttaagagaaaaaatctaacatataaacataaaaggttaatggtgtttgatcatgaaaacttacttgttattggagtgttgtttgatttgaact 31825669  T
Q  148 tgaag 152  Q
    |||||    
T  31825670 tgaag 31825674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 49 - 179
Target Start/End: Complemental strand, 27759144 - 27759013
Alignment:
Q  49 ttctaatttaagaggaaaaatttaacatataaacataaaag-ttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaacc 147  Q
    |||||||||||| | |||||| ||||||||||||||||||| |||||| | |||||| |||| |||||||||||||||||||||||||| |||||||||     
T  27759144 ttctaatttaagcgaaaaaatctaacatataaacataaaaggttaatggtgtttgatcatgaaaacttacttgttattggagtgttgtttgatttgaact 27759045  T
Q  148 tgaagaaaataaggatttggttaatttgagag 179  Q
    ||||| || |  |||||||| | |||||||||    
T  27759044 tgaaggaattttggatttggatgatttgagag 27759013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 49 - 142
Target Start/End: Original strand, 20779649 - 20779743
Alignment:
Q  49 ttctaatttaagaggaaaaatttaacatataaacataaaag-ttaatgatatttgattatgataacttacttgttattggagtgttgttggattt 142  Q
    |||||||||||||| |||||| ||||||||||||||||||| |||||| | ||||||||||| |||||||||||||||| ||||||||| |||||    
T  20779649 ttctaatttaagagaaaaaatataacatataaacataaaaggttaatggtgtttgattatgaaaacttacttgttattgaagtgttgtttgattt 20779743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 49 - 145
Target Start/End: Complemental strand, 44099976 - 44099879
Alignment:
Q  49 ttctaatttaagaggaaaaatttaacatataaacataaaa-gttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaa 145  Q
    ||||||||||||||||||||| ||||||||||||||||||  | |||| || |||||| ||| |||||||||||||||||||||||||| ||||||||    
T  44099976 ttctaatttaagaggaaaaatgtaacatataaacataaaatatcaatggtacttgattgtgaaaacttacttgttattggagtgttgtttgatttgaa 44099879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 49 - 152
Target Start/End: Original strand, 32938576 - 32938680
Alignment:
Q  49 ttctaatttaagaggaaaaatttaacatataaacataaaagttaa-tgatatttgattatgataacttacttgttattggagtgttgttggatttgaacc 147  Q
    |||||||||||||  |||||| |||||||||||||| |||| ||| |||| ||||||||||| ||||||||||| |||||||||||||| |||||||||     
T  32938576 ttctaatttaagacaaaaaatctaacatataaacattaaaggtaaatgatgtttgattatgaaaacttacttgtgattggagtgttgtttgatttgaact 32938675  T
Q  148 tgaag 152  Q
    |||||    
T  32938676 tgaag 32938680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 64 - 179
Target Start/End: Complemental strand, 21711035 - 21710919
Alignment:
Q  64 aaaaatttaacatataaacataaaag-ttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaacctgaagaaaataagga 162  Q
    |||||| ||| ||||||||||||||| |||||| | |||||| |||| |||||||||||||||||||||||||| ||||||||| ||||| || |  |||    
T  21711035 aaaaatataaaatataaacataaaaggttaatggtgtttgatcatgaaaacttacttgttattggagtgttgtttgatttgaacttgaaggaattttgga 21710936  T
Q  163 tttggttaatttgagag 179  Q
    ||||| | |||||||||    
T  21710935 tttggatgatttgagag 21710919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 50 - 145
Target Start/End: Original strand, 23125248 - 23125345
Alignment:
Q  50 tctaatttaagaggaaaaatttaacatataaacataaaag--ttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaa 145  Q
    ||||||||||||| |||| | |||||||| |||||||||   |||| ||||||||||||||| ||||||||||||||| |||||||||| ||||||||    
T  23125248 tctaatttaagagaaaaattctaacatatcaacataaaaagattaacgatatttgattatgaaaacttacttgttattagagtgttgtttgatttgaa 23125345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 50 - 126
Target Start/End: Original strand, 20759714 - 20759792
Alignment:
Q  50 tctaatttaagaggaaaaatttaacatataaacataaaa--gttaatgatatttgattatgataacttacttgttattg 126  Q
    |||||||||||||||||||| ||||||||||| ||||||  ||||||| | ||||||||||| ||||||||||||||||    
T  20759714 tctaatttaagaggaaaaatctaacatataaatataaaaaggttaatggtgtttgattatgaaaacttacttgttattg 20759792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 50 - 126
Target Start/End: Original strand, 20766105 - 20766183
Alignment:
Q  50 tctaatttaagaggaaaaatttaacatataaacataaaa--gttaatgatatttgattatgataacttacttgttattg 126  Q
    |||||||||||||||||||| ||||||||||| ||||||  ||||||| | ||||||||||| ||||||||||||||||    
T  20766105 tctaatttaagaggaaaaatctaacatataaatataaaaaggttaatggtgtttgattatgaaaacttacttgttattg 20766183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 77 - 174
Target Start/End: Original strand, 39039485 - 39039583
Alignment:
Q  77 ataaacataaaa-gttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaacctgaagaaaataaggatttggttaattt 174  Q
    ||||| |||||| ||||||| || || ||||||| |||||||||||||||||||||||| | ||||||||| |||||||| | | ||||||||||||||    
T  39039485 ataaatataaaatgttaatggtacttaattatgaaaacttacttgttattggagtgttggttgatttgaacttgaagaaattgaagatttggttaattt 39039583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 63 - 152
Target Start/End: Complemental strand, 49063461 - 49063371
Alignment:
Q  63 gaaaaatttaacatataaacataaaag-ttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaacctgaag 152  Q
    |||||||  |||||||||||||||||| |||||| | |||||| |||| |||||||||||||||||| ||||||| ||||||||| |||||    
T  49063461 gaaaaatacaacatataaacataaaaggttaatggtgtttgatcatgaaaacttacttgttattggaatgttgtttgatttgaacttgaag 49063371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 52 - 155
Target Start/End: Complemental strand, 12587257 - 12587153
Alignment:
Q  52 taatttaagaggaaaaatttaacatataaacataaaa-gttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaacctga 150  Q
    ||||||||||||||   | |||||||| ||||||||| ||||||| || | |||||||| |||||||||||||||| |||| |||  ||||||||  |||    
T  12587257 taatttaagaggaacgttgtaacatattaacataaaatgttaatggtaatggattatgaaaacttacttgttattgaagtggtgtctgatttgaatttga 12587158  T
Q  151 agaaa 155  Q
    |||||    
T  12587157 agaaa 12587153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 116; Significance: 1e-58; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 49 - 260
Target Start/End: Original strand, 21760951 - 21761164
Alignment:
Q  49 ttctaatttaagaggaaaaatttaacatataaacataaaag-ttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaacc 147  Q
    ||||||||||||||||||||| ||||||||||||||||||| |||||| | ||||||||||| |||||||||||||||||||||||||| |||||||||     
T  21760951 ttctaatttaagaggaaaaatctaacatataaacataaaaggttaatggtgtttgattatgaaaacttacttgttattggagtgttgtttgatttgaact 21761050  T
Q  148 tgaagaaaataaggatttggttaatttgagag--tttttggagatttgagatgagaaatgaggaaatgagctgctgtctgacctttaaaagggtacacaa 245  Q
    ||||| || |  |||||||| | |||||||||  |||||||||||||||||||||||||||||||||||| |||||| ||| ||||||||||  || |||    
T  21761051 tgaaggaattttggatttgggtgatttgagagaatttttggagatttgagatgagaaatgaggaaatgagttgctgt-tgagctttaaaaggacacgcaa 21761149  T
Q  246 tgtgacttaactcac 260  Q
    ||||| |||||||||    
T  21761150 tgtgagttaactcac 21761164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 49 - 260
Target Start/End: Complemental strand, 15471194 - 15470976
Alignment:
Q  49 ttctaatttaag---aggaaaaatttaacatataaacataaaa--gttaatgatatttgattatgataacttacttgttattggagtgttgttggatttg 143  Q
    ||||||||||||   ||||||||| ||||||||||||||||||  ||||||| | ||||||||||| |||||||||||||||||||||||||| | ||||    
T  15471194 ttctaatttaagaggaggaaaaatctaacatataaacataaaaaggttaatggtgtttgattatgaaaacttacttgttattggagtgttgtttgctttg 15471095  T
Q  144 aacctgaagaaaataaggatttggttaatttgagag--tttttggagatttgagatgagaaatgaggaaatgagctgctgtctgacctttaaaagggtac 241  Q
    ||| ||||| || |  |||||||| | |||||||||   |||||||||||| ||||| ||||||||||||||||||  ||||||| |||||||||| |||    
T  15471094 aacttgaaggaattttggatttgggtgatttgagagaaattttggagattttagatgggaaatgaggaaatgagcttatgtctgagctttaaaaggatac 15470995  T
Q  242 acaatgtgacttaactcac 260  Q
     ||| |||| |||||||||    
T  15470994 gcaacgtgagttaactcac 15470976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 52 - 215
Target Start/End: Original strand, 25804143 - 25804309
Alignment:
Q  52 taatttaagaggaaaaatttaacatataaacataaaa-gttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaacctga 150  Q
    |||||||||||||||||| |||||||||||||||||| |||| || | ||||||||||| |||||| ||||||||||||||||||| ||||||||| |||    
T  25804143 taatttaagaggaaaaatctaacatataaacataaaatgttactggtttttgattatgaaaacttatttgttattggagtgttgtttgatttgaacttga 25804242  T
Q  151 agaaaataaggatttggttaattt--gagagtttttggagatttgagatgagaaatgaggaaatgag 215  Q
    | ||| |||||||||| || ||||  |||||||||| ||||||| ||||| ||||||||||| ||||    
T  25804243 aaaaattaaggatttgattgatttgagagagtttttagagattttagatgtgaaatgaggaattgag 25804309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 49 - 237
Target Start/End: Original strand, 48707492 - 48707682
Alignment:
Q  49 ttctaatttaagaggaaaaatttaacatataaacataaaag-ttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaacc 147  Q
    ||||||| ||||||||||||| ||||||||||||||||| | |||||| | ||||||||||| |||||||||||||||||||||||||| ||||| |||     
T  48707492 ttctaatctaagaggaaaaatctaacatataaacataaacggttaatggtgtttgattatgaaaacttacttgttattggagtgttgtttgatttaaact 48707591  T
Q  148 tgaagaaaataaggatttggttaattt--gagagtttttggagatttgagatgagaaatgaggaaatgagctgctgtctgacctttaaaagg 237  Q
    ||||| || |  |||||||||| ||||  ||||| ||||| |||||| ||||| |||| ||||||||||| || ||||| | ||||||||||    
T  48707592 tgaaggaatttcggatttggttgatttgagagagattttgtagattttagatgtgaaa-gaggaaatgagttgttgtctaatctttaaaagg 48707682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 49 - 220
Target Start/End: Original strand, 48569125 - 48569300
Alignment:
Q  49 ttctaatttaagaggaaaaatt-taacatataaacataaaag-ttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaac 146  Q
    |||||||||||||| ||||| | ||||||||||||||||||| |||||||| |||||| |||| |||||||||||||||||| ||||||| |||||||||    
T  48569125 ttctaatttaagagaaaaaaatctaacatataaacataaaaggttaatgatgtttgatcatgaaaacttacttgttattggaatgttgtttgatttgaac 48569224  T
Q  147 ctgaagaaaataaggatttggttaattt--gagagtttttggagatttgagatgagaaatgaggaaatgagctgct 220  Q
     ||||| || |  |||||| | | ||||  ||||| |||| ||||||| |||||||||||||||||||||| ||||    
T  48569225 ttgaaggaattttggattttggtgatttgagagagatttttgagattttagatgagaaatgaggaaatgaggtgct 48569300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 49 - 152
Target Start/End: Original strand, 21485347 - 21485451
Alignment:
Q  49 ttctaatttaagaggaaaaatttaacatataaacataaaag-ttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaacc 147  Q
    ||||||||||||||  ||||||||||||||||||||||||| |||||| | ||||||||||| |||||||||||||||||||||||||| |||||||||     
T  21485347 ttctaatttaagagagaaaatttaacatataaacataaaaggttaatggtgtttgattatgaaaacttacttgttattggagtgttgtttgatttgaact 21485446  T
Q  148 tgaag 152  Q
    |||||    
T  21485447 tgaag 21485451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 50 - 289
Target Start/End: Complemental strand, 26088969 - 26088731
Alignment:
Q  50 tctaatttaagaggaaaaatttaacatataaacataaaagttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaacctg 149  Q
    |||||||||||||||||||| ||||||| | | | ||| ||||||| | ||||||||||| || |||||||||||||| |||||||| ||||||||  ||    
T  26088969 tctaatttaagaggaaaaatctaacataaacataaaaaggttaatggtgtttgattatgaaaatttacttgttattggtgtgttgtttgatttgaagttg 26088870  T
Q  150 aagaaaataaggatttggttaattt--gagagtttttggagatttgagatgagaaatgaggaaatgagctgctgtctgacctttaaaagggtacacaatg 247  Q
    ||| || |  |||||||| | ||||  ||||| ||||||||||   |||||||||||||| ||||||| |  ||||||||||||||||||  || ||  |    
T  26088869 aagtaattttggatttgggtgatttgagagagattttggagat---agatgagaaatgagaaaatgaggttatgtctgacctttaaaaggacacgcagcg 26088773  T
Q  248 tgacttaactcacattggcctttggcgtgatttaactcacgc 289  Q
    ||| ||||||  |  |||||||  ||||||||||||||||||    
T  26088772 tgagttaacttgcgctggccttctgcgtgatttaactcacgc 26088731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 49 - 152
Target Start/End: Original strand, 49599570 - 49599674
Alignment:
Q  49 ttctaatttaagaggaaaaatttaacatataaacataaaag-ttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaacc 147  Q
    |||||||||||||| |||||| ||||||||||||||||||| |||||| | ||||||||||| |||||||||||||||||||||||||| |||||||||     
T  49599570 ttctaatttaagagaaaaaatctaacatataaacataaaaggttaatggtctttgattatgaaaacttacttgttattggagtgttgtttgatttgaact 49599669  T
Q  148 tgaag 152  Q
    |||||    
T  49599670 tgaag 49599674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 49 - 179
Target Start/End: Complemental strand, 3658153 - 3658022
Alignment:
Q  49 ttctaatttaagaggaaaaatttaacatataaacataaaa-gttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaacc 147  Q
    ||||||||| |||| |||||| |||||||||||||||||| ||||||||| |||||| |||| |||||||||||||||||||||||||| |||||||||     
T  3658153 ttctaattttagagaaaaaatctaacatataaacataaaatgttaatgatgtttgatcatgaaaacttacttgttattggagtgttgtttgatttgaact 3658054  T
Q  148 tgaagaaaataaggatttggttaatttgagag 179  Q
    ||||| || |  |||||||| | |||||||||    
T  3658053 tgaaggaattttggatttgggtgatttgagag 3658022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 49 - 155
Target Start/End: Complemental strand, 34335835 - 34335728
Alignment:
Q  49 ttctaatttaagaggaaaaatttaacatataaacataaaa-gttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaacc 147  Q
    ||||||||||||||||||||| || ||||||||||||||| ||||||| || |||||||||| |||||||||||||||||||||||| | |||||||||     
T  34335835 ttctaatttaagaggaaaaatgtagcatataaacataaaatgttaatggtacttgattatgaaaacttacttgttattggagtgttggttgatttgaact 34335736  T
Q  148 tgaagaaa 155  Q
    ||||||||    
T  34335735 tgaagaaa 34335728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 49 - 152
Target Start/End: Original strand, 41875599 - 41875703
Alignment:
Q  49 ttctaatttaagaggaaaaatttaacatataaacataaaag-ttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaacc 147  Q
    |||||||||||||| ||||||  |||||||||||||||||| |||||||| |||||| |||| |||||||||||||||||||||||||| |||||||||     
T  41875599 ttctaatttaagagaaaaaatccaacatataaacataaaaggttaatgatgtttgatcatgaaaacttacttgttattggagtgttgtttgatttgaact 41875698  T
Q  148 tgaag 152  Q
    |||||    
T  41875699 tgaag 41875703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 49 - 198
Target Start/End: Complemental strand, 27799250 - 27799099
Alignment:
Q  49 ttctaatttaagaggaaaaatttaacatataaacataaaagttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaacct 148  Q
    ||||||||||| ||||||||| |||||||||||||||||  |||||| || |||||||||| |||||||||||||||| ||||||| | ||||||||| |    
T  27799250 ttctaatttaaaaggaaaaatgtaacatataaacataaatattaatggtacttgattatgaaaacttacttgttattgaagtgttggttgatttgaactt 27799151  T
Q  149 gaagaaaataaggatttggttaattt--gagagtttttggagatttgagatg 198  Q
    ||| ||| | ||| ||||| | ||||  ||||| |||| ||||||| |||||    
T  27799150 gaaaaaattgaggttttggatgatttaagagagattttagagattttagatg 27799099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 49 - 151
Target Start/End: Complemental strand, 5764697 - 5764594
Alignment:
Q  49 ttctaatttaagaggaaaaatttaacatataaacataaaag-ttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaacc 147  Q
    |||||||||||||| |||||| ||||||||||||||||||| |||||| | ||||||||||| |||||||||||||||||| ||||||  |||||||||     
T  5764697 ttctaatttaagagaaaaaatctaacatataaacataaaaggttaatggtgtttgattatgaaaacttacttgttattggattgttgtgtgatttgaact 5764598  T
Q  148 tgaa 151  Q
    ||||    
T  5764597 tgaa 5764594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 49 - 214
Target Start/End: Complemental strand, 27259557 - 27259390
Alignment:
Q  49 ttctaatttaagaggaaaaatttaacatataaacataaaa-gttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaacc 147  Q
    ||||||||||||||||||||| ||||||||||| |||||| ||||||| | ||||||||||| |||||| |||||| |||||| ||||| ||||| |||     
T  27259557 ttctaatttaagaggaaaaatctaacatataaatataaaaggttaatgttgtttgattatgaaaacttagttgttactggagtattgtttgattttaact 27259458  T
Q  148 tgaagaaaataaggatttggttaatt--tgagagtttttggagatttgagatgagaaatgaggaaatga 214  Q
    ||||  || |  |||||||||| |||   ||||| |||||||||||| ||||| |||| ||||||||||    
T  27259457 tgaaagaattttggatttggttgattagggagagattttggagattttagatgtgaaa-gaggaaatga 27259390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 49 - 208
Target Start/End: Complemental strand, 18169519 - 18169358
Alignment:
Q  49 ttctaatttaagaggaaaaatttaacatataaacataaaag-ttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaacc 147  Q
    |||||||||| ||| |||||| ||||||||||||||||||| |||| | | |||||| |||| |||||||||||||||||||| ||||| |||||||||     
T  18169519 ttctaatttatgag-aaaaatataacatataaacataaaaggttaagggtgtttgatcatgaaaacttacttgttattggagtattgtttgatttgaaca 18169421  T
Q  148 tgaagaaaataaggatttggttaattt--gagagtttttggagatttgagatgagaaatgagg 208  Q
    ||||| || |  |||||||| | ||||  ||||| |||| ||||||| | |||||||||||||    
T  18169420 tgaaggaattttggatttgggtgatttgagagagatttttgagattttatatgagaaatgagg 18169358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 63 - 152
Target Start/End: Original strand, 39224935 - 39225025
Alignment:
Q  63 gaaaaatttaacatataaacataaaag-ttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaacctgaag 152  Q
    ||||||| ||||||||||||||||||| |||||| | |||||| |||| |||||||||||||||||||||||||| ||||||||| |||||    
T  39224935 gaaaaatataacatataaacataaaaggttaatggtgtttgatcatgaaaacttacttgttattggagtgttgtttgatttgaacttgaag 39225025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 274 - 383
Target Start/End: Original strand, 21761151 - 21761260
Alignment:
Q  274 gtgatttaactcacgctgatttaacacatgtgtgacttaactcacactgggaacattttcggaagtttgattggaagtgagtaaaacttgttggaagaag 373  Q
    |||| ||||||||||||| ||||||||||| |||| ||||||||| |||||  ||||||  ||||||||  || ||||||  ||||||||||||||||||    
T  21761151 gtgagttaactcacgctggtttaacacatgcgtgagttaactcacgctgggggcatttttagaagtttggctgtaagtgaacaaaacttgttggaagaag 21761250  T
Q  374 agcatttttc 383  Q
    ||||||||||    
T  21761251 agcatttttc 21761260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 49 - 152
Target Start/End: Complemental strand, 18841944 - 18841839
Alignment:
Q  49 ttctaatttaagag-gaaaaatttaacatataaacataaaag-ttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaac 146  Q
    |||||||||||||| ||||||| ||||||||||||||||||| |||||| | ||||||||||| |||||  |||||||||| |||||||| ||||| |||    
T  18841944 ttctaatttaagagagaaaaatctaacatataaacataaaaggttaatggtgtttgattatgaaaacttttttgttattggtgtgttgtttgatttaaac 18841845  T
Q  147 ctgaag 152  Q
     |||||    
T  18841844 ttgaag 18841839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 273 - 383
Target Start/End: Complemental strand, 15470990 - 15470880
Alignment:
Q  273 cgtgatttaactcacgctgatttaacacatgtgtgacttaactcacactgggaacattttcggaagtttgattggaagtgagtaaaacttgttggaagaa 372  Q
    ||||| ||||||||||||| ||||||||||| |||| ||||||||| || ||   ||||||| ||||||| |||| | | || |||||||||||| ||||    
T  15470990 cgtgagttaactcacgctggtttaacacatgcgtgagttaactcacgctaggggtattttcgaaagtttggttgggaataagcaaaacttgttgggagaa 15470891  T
Q  373 gagcatttttc 383  Q
    |||||||||||    
T  15470890 gagcatttttc 15470880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 51 - 206
Target Start/End: Complemental strand, 12025803 - 12025646
Alignment:
Q  51 ctaatttaagaggaaaaatttaacatataaacataaaa-gttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaacctg 149  Q
    |||||| |||| ||||||| |||||||||||||||||| || ||| ||| |||||||| | || |||| ||||||||| |||||| | ||||||||| ||    
T  12025803 ctaattaaagatgaaaaatgtaacatataaacataaaatgtcaataatacttgattataaaaaattacgtgttattggggtgttggttgatttgaacttg 12025704  T
Q  150 aagaaaataaggatttggttaattt--gagagtttttggagatttgagatgagaaatga 206  Q
    | | ||||  || ||||| | ||||  |||||||||| ||||||| ||||| |||||||    
T  12025703 atg-aaattggggtttggatgatttgagagagtttttagagattttagatgtgaaatga 12025646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 293 - 382
Target Start/End: Complemental strand, 26088707 - 26088618
Alignment:
Q  293 tttaacacatgtgtgacttaactcacactgggaacattttcggaagtttgattggaagtgagtaaaacttgttggaagaagagcattttt 382  Q
    |||||||||||  ||| |||||||||||   |  ||||||||||||||||||||| | |||| |||||||||||| ||||||| ||||||    
T  26088707 tttaacacatgcatgagttaactcacaccatgggcattttcggaagtttgattgggaatgagcaaaacttgttgggagaagagtattttt 26088618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 49 - 220
Target Start/End: Original strand, 46182264 - 46182441
Alignment:
Q  49 ttctaatttaagag--gaaaaatttaacatataaacataaaa-gttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaa 145  Q
    ||||||||||||||   |||||| ||| ||||||| |||||| ||||||| | |||||| |||| |||||| ||||||  ||| ||||||| |||||||     
T  46182264 ttctaatttaagagaaaaaaaatctaatatataaatataaaaggttaatggtgtttgatcatgaaaacttatttgttaccggactgttgtttgatttgag 46182363  T
Q  146 cctgaagaaaataaggatttggttaatttgagag---tttttggagatttgagatgagaaatgaggaaatgagctgct 220  Q
    | ||||| || |  | |||||| | |||||||||   ||||| ||||||| |||| ||||||||| ||||||| ||||    
T  46182364 cttgaaggaattttgaatttgggtgatttgagagagattttttgagattttagataagaaatgagaaaatgaggtgct 46182441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 172 - 220
Target Start/End: Original strand, 49599680 - 49599728
Alignment:
Q  172 tttgagagtttttggagatttgagatgagaaatgaggaaatgagctgct 220  Q
    ||||||| ||||| ||||||| |||||||||||||||||||||| ||||    
T  49599680 tttgagatttttttgagattttagatgagaaatgaggaaatgaggtgct 49599728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 98; Significance: 5e-48; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 49 - 214
Target Start/End: Complemental strand, 28717707 - 28717537
Alignment:
Q  49 ttctaatttaagaggaaaaatttaacatat---aaacataaaagttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaa 145  Q
    |||||||||||||| |||||| ||||||||   ||||||||||||||||||| ||||||||||| |||||||||| ||||||||||||||||||||||||    
T  28717707 ttctaatttaagagaaaaaatctaacatattataaacataaaagttaatgatgtttgattatgaaaacttacttgctattggagtgttgttggatttgaa 28717608  T
Q  146 cctgaagaaaataaggatttggttaattt--gagagtttttggagatttgagatgagaaatgaggaaatga 214  Q
      |||||||| || | |||||||| ||||  ||||||||||||| ||||||||||||||||||||||||||    
T  28717607 attgaagaaattaggaatttggttgatttgagagagtttttggatatttgagatgagaaatgaggaaatga 28717537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 49 - 260
Target Start/End: Complemental strand, 10975447 - 10975234
Alignment:
Q  49 ttctaatttaagaggaaaaatttaacatataaacataaaag-ttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaacc 147  Q
    ||||||||||||||||||||| ||||||||||||||||||| |||||||| ||||||| ||| |||||||||||||||||||| ||||  |||||||||     
T  10975447 ttctaatttaagaggaaaaatctaacatataaacataaaaggttaatgatgtttgattttgaaaacttacttgttattggagtattgtgtgatttgaact 10975348  T
Q  148 tgaagaaaataaggatttggttaatttgagag--tttttggagatttgagatgagaaatgaggaaatgagctgctgtctgacctttaaaagggtacacaa 245  Q
    ||||| || |  |||||||||| |||||||||   |||||||||||| ||| | |||| ||||||||||| ||||||||||  |||||||||  || |||    
T  10975347 tgaaggaattttggatttggttgatttgagagaaattttggagattttagaagtgaaa-gaggaaatgagttgctgtctgatttttaaaaggacacgcaa 10975249  T
Q  246 tgtgacttaactcac 260  Q
      |||||||||||||    
T  10975248 catgacttaactcac 10975234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 49 - 215
Target Start/End: Complemental strand, 2598847 - 2598678
Alignment:
Q  49 ttctaatttaagaggaaaaatttaacatataaacataaaagtt-aatgatatttgattatgataacttacttgttattggagtgttgttggatttgaacc 147  Q
    |||||||||||||| |||||| ||||||||||||||||||||| |||| | ||||||||||| ||||||||||||| |||||||||||| |||||||||     
T  2598847 ttctaatttaagagaaaaaatctaacatataaacataaaagtttaatggtgtttgattatgaaaacttacttgttaatggagtgttgtttgatttgaact 2598748  T
Q  148 tgaagaaaataaggatttggttaatttg--agagtttttggagatttgagatgagaaatgaggaaatgag 215  Q
    | ||| || |  |||||||| | |||||  |||| |||||||||||| |||||| |||||||||||||||    
T  2598747 ttaaggaattttggatttgggtgatttgaaagagattttggagattttagatgaaaaatgaggaaatgag 2598678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 52 - 179
Target Start/End: Original strand, 25361172 - 25361300
Alignment:
Q  52 taatttaagaggaaaaatttaacatataaacataaaag-ttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaacctga 150  Q
    |||||||||||||||||| ||||||||||||||||||| |||||| | ||||||||||| |||||||||||||||||||||||||||||||||||  |||    
T  25361172 taatttaagaggaaaaatctaacatataaacataaaaggttaatggtgtttgattatgaaaacttacttgttattggagtgttgttggatttgaatttga 25361271  T
Q  151 agaaaataaggatttggttaatttgagag 179  Q
    || || | ||||||| | | |||||||||    
T  25361272 aggaatttaggattttgatgatttgagag 25361300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 49 - 212
Target Start/End: Original strand, 15798667 - 15798834
Alignment:
Q  49 ttctaatttaagaggaaaaatttaacatataaacataaaa--gttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaac 146  Q
    ||||||| ||||| |||||||  |||||||||||||||||  ||||||| | ||| ||||||| |||||||||||||||||||||||||| ||||| |||    
T  15798667 ttctaatgtaagaagaaaaatccaacatataaacataaaaaggttaatggtgtttcattatgaaaacttacttgttattggagtgttgtttgatttaaac 15798766  T
Q  147 ctgaagaaaataaggatttggttaattt--gagagtttttggagatttgagatgagaaatgaggaaat 212  Q
     ||||| || |  |||||||| | ||||  ||||| |||||||||||| ||||| |||||||||||||    
T  15798767 ttgaaggaattttggatttgggtgatttgagagagattttggagattttagatgggaaatgaggaaat 15798834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 50 - 215
Target Start/End: Original strand, 4113804 - 4113973
Alignment:
Q  50 tctaatttaagaggaaaaatt-taacatataaacataaaag-ttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaacc 147  Q
    ||||||||||||| ||||| | ||| ||||||||||||||| |||||| | ||||||||||| || ||||||||||||||||||||||| |||||||||     
T  4113804 tctaatttaagagaaaaaaatctaatatataaacataaaaggttaatggtgtttgattatgaaaatttacttgttattggagtgttgtttgatttgaact 4113903  T
Q  148 tgaagaaaataaggatttggttaatttgagag--tttttggagatttgagatgagaaatgaggaaatgag 215  Q
    ||||| || |   ||||||| | | |||||||   |||| ||||||| ||||||||||||||||||||||    
T  4113904 tgaaggaattttagatttgggtgacttgagagatatttttgagattttagatgagaaatgaggaaatgag 4113973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 50 - 145
Target Start/End: Complemental strand, 12805058 - 12804962
Alignment:
Q  50 tctaatttaagaggaaaaatttaacatataaacataaaag-ttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaa 145  Q
    ||||||||||||| |||||| ||||||||||||||||||| |||||||| ||||||||||| ||||||||||||| | |||||||||| ||||||||    
T  12805058 tctaatttaagagaaaaaatctaacatataaacataaaaggttaatgatgtttgattatgaaaacttacttgttactcgagtgttgtttgatttgaa 12804962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 49 - 179
Target Start/End: Complemental strand, 7081785 - 7081655
Alignment:
Q  49 ttctaatttaagaggaaaaatttaacatataaacataaaag-ttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaacc 147  Q
    |||||||||| ||| |||||| ||||||||||||||||||| |||||| | |||||| |||| |||||||||||||||||||||||||| |||||||||     
T  7081785 ttctaatttatgag-aaaaatataacatataaacataaaaggttaatggtgtttgatcatgaaaacttacttgttattggagtgttgtttgatttgaact 7081687  T
Q  148 tgaagaaaataaggatttggttaatttgagag 179  Q
    ||||| || |  |||||||| | |||||||||    
T  7081686 tgaaggaattttggatttggatgatttgagag 7081655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 56 - 152
Target Start/End: Original strand, 23229324 - 23229422
Alignment:
Q  56 ttaagaggaaaaatttaacatataaacataaaa--gttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaacctgaag 152  Q
    |||||||||||||| ||||||||||||||||||  ||||||| | ||||||||||| |||||||||||| || |||||||||| ||||||||| |||||    
T  23229324 ttaagaggaaaaatctaacatataaacataaaaaggttaatggtgtttgattatgaaaacttacttgtttttagagtgttgtttgatttgaacttgaag 23229422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 50 - 145
Target Start/End: Original strand, 36317622 - 36317721
Alignment:
Q  50 tctaatttaagaggaa--aaatttaacatataaacataaaa--gttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaa 145  Q
    ||||||||||||| ||  |||| |||||||| |||||||||  ||||||| | ||||||||||| |||||||||||||||||||||||||| ||||||||    
T  36317622 tctaatttaagagcaataaaatctaacatatcaacataaaaaggttaatggtgtttgattatgaaaacttacttgttattggagtgttgtttgatttgaa 36317721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 49 - 134
Target Start/End: Original strand, 16418676 - 16418761
Alignment:
Q  49 ttctaatttaagaggaaaaatttaacatataaacataaaa-gttaatgatatttgattatgataacttacttgttattggagtgttg 134  Q
    |||||||||||||||||||| |||||||||||||||||||  | |||| || |||||||||| ||||||||||||||| ||||||||    
T  16418676 ttctaatttaagaggaaaaaattaacatataaacataaaatatcaatggtacttgattatga-aacttacttgttattagagtgttg 16418761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 71 - 179
Target Start/End: Complemental strand, 33370115 - 33370006
Alignment:
Q  71 taacatataaacataaaa-gttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaacctgaagaaaataaggatttggtt 169  Q
    |||||||||||||||||| ||||||| | ||||||||||| ||||||  |||||||| ||||||||| ||||||||| ||||| || |  |||||||| |    
T  33370115 taacatataaacataaaatgttaatggtgtttgattatgaaaacttagatgttattgaagtgttgtttgatttgaacttgaaggaattttggatttgggt 33370016  T
Q  170 aatttgagag 179  Q
     |||||||||    
T  33370015 gatttgagag 33370006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 50 - 152
Target Start/End: Complemental strand, 12742239 - 12742140
Alignment:
Q  50 tctaatttaagaggaaaaatttaacatataaacataaaa-gttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaacct 148  Q
    ||||||||||||| |||||| |||||||||||||||||| ||||||| | ||||||||||| |    |||||||| | |||||||||| ||||||||| |    
T  12742239 tctaatttaagagaaaaaatctaacatataaacataaaaggttaatggtgtttgattatgaaa----acttgttactcgagtgttgtttgatttgaactt 12742144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 79 - 145
Target Start/End: Original strand, 22858328 - 22858396
Alignment:
Q  79 aaacataaaa--gttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaa 145  Q
    ||||||||||  ||||||||||||| ||| ||| ||||||||||||||| |||||||||| ||||||||    
T  22858328 aaacataaaaaggttaatgatatttaattttgaaaacttacttgttattagagtgttgtttgatttgaa 22858396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 273 - 382
Target Start/End: Complemental strand, 28717457 - 28717348
Alignment:
Q  273 cgtgatttaactcacgctgatttaacacatgtgtgacttaactcacactgggaacattttcggaagtttgattggaagtgagtaaaacttgttggaagaa 372  Q
    ||||| |||| ||||  ||||||||||||||||||||||||||||    |||  || ||| | ||||||| |||| |||||| |||||||||||| ||||    
T  28717457 cgtgagttaagtcacattgatttaacacatgtgtgacttaactcatgtggggggcacttttgaaagtttggttgggagtgagcaaaacttgttgggagaa 28717358  T
Q  373 gagcattttt 382  Q
    || |||||||    
T  28717357 gatcattttt 28717348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 272 - 318
Target Start/End: Original strand, 19550923 - 19550969
Alignment:
Q  272 gcgtgatttaactcacgctgatttaacacatgtgtgacttaactcac 318  Q
    |||||||||||||||||| ||||||||||||  |||| |||||||||    
T  19550923 gcgtgatttaactcacgccgatttaacacatacgtgagttaactcac 19550969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 273 - 379
Target Start/End: Original strand, 23229501 - 23229606
Alignment:
Q  273 cgtgatttaactcacgctgatttaacacatgtgtgacttaactcacactgggaacattttcggaagtttgattggaagtgagtaaaacttgttggaagaa 372  Q
    ||||| ||||| ||||| || ||||||||||  ||| |||||||||||   ||||||||||||||||||| |||  | |||  ||||  |||||||||||    
T  23229501 cgtgagttaacccacgcagaattaacacatgcatgagttaactcacac-atgaacattttcggaagtttggttgagaatgaacaaaatatgttggaagaa 23229599  T
Q  373 gagcatt 379  Q
    |||||||    
T  23229600 gagcatt 23229606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 295 - 383
Target Start/End: Complemental strand, 15233838 - 15233750
Alignment:
Q  295 taacacatgtgtgacttaactcacactgggaacattttcggaagtttgattggaagtgagtaaaacttgttggaagaagagcatttttc 383  Q
    ||||||||  |||||||||||||| ||| || ||||||||||||| |  |||| |||||| ||||  |  ||| |||||||||||||||    
T  15233838 taacacatacgtgacttaactcacgctgtgagcattttcggaagtgtagttgggagtgagcaaaatgtaatgggagaagagcatttttc 15233750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 50 - 151
Target Start/End: Original strand, 17196056 - 17196159
Alignment:
Q  50 tctaatttaagaggaaaaatttaacatataaacataa--aagttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaacc 147  Q
    ||||||||||||| ||||||  ||||||  |||||||  | ||||||| |||||| |||||| || |||||| |||||  |||||| || |||||||||     
T  17196056 tctaatttaagagaaaaaataaaacataacaacataaataggttaatggtatttggttatgaaaatttacttattattaaagtgttatttgatttgaact 17196155  T
Q  148 tgaa 151  Q
    ||||    
T  17196156 tgaa 17196159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 91; Significance: 8e-44; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 49 - 207
Target Start/End: Original strand, 27318412 - 27318573
Alignment:
Q  49 ttctaatttaagaggaaaaatttaacatataaacataaaag-ttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaacc 147  Q
    ||||||||||||| ||||||| ||||||||||| ||||||| |||||||| ||| ||||||| ||||||||||||||||||||||| |||||||| |||     
T  27318412 ttctaatttaagaagaaaaatctaacatataaatataaaaggttaatgatgttttattatgaaaacttacttgttattggagtgttcttggatttcaact 27318511  T
Q  148 tgaagaaaataaggatttggttaattt--gagagtttttggagatttgagatgagaaatgag 207  Q
    |||||||| || |||||||||| || |  |||||||||||||||||||||||||||||||||    
T  27318512 tgaagaaattagggatttggtttatctgagagagtttttggagatttgagatgagaaatgag 27318573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 56 - 318
Target Start/End: Complemental strand, 31267026 - 31266759
Alignment:
Q  56 ttaagaggaaaaatttaacatataaacataaaa--gttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaacctgaaga 153  Q
    |||||||||||| | ||||||||||||||||||  ||||||| | ||||||||||| ||||||| | |||||||||||||||| ||||||||| ||||||    
T  31267026 ttaagaggaaaagtctaacatataaacataaaaaggttaatggtgtttgattatgaaaacttaccttttattggagtgttgtttgatttgaacttgaaga 31266927  T
Q  154 aaataaggatttggttaattt--gagagtttttggaga-tttgagatgagaaatgaggaaatgagctgctgtctgacctttaaaagggtacacaatgtga 250  Q
    || |  |||||||| | ||||  ||||| ||||||||| ||| ||||| |||||||||||||||  |  |||||||| |||||||||  ||||| |||||    
T  31266926 aattttggatttgggtgatttgagagagattttggagattttcagatgggaaatgaggaaatgaagttttgtctgacttttaaaaggacacacagtgtga 31266827  T
Q  251 cttaactcacattggcctttggcgtgatttaactcacgctgatttaacacatgtgtgacttaactcac 318  Q
     |||||| ||  |||||||  |||||| |||| |||||| |  |||||||||| |||| |||||||||    
T  31266826 gttaacttacgctggccttcagcgtgacttaattcacgcaggattaacacatgcgtgagttaactcac 31266759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 49 - 215
Target Start/End: Original strand, 39477756 - 39477924
Alignment:
Q  49 ttctaatttaagaggaaaaatttaacatataaacataaaa-gttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaacc 147  Q
    |||||||||| ||| |||||| |||||||||||||||||| ||||||||| |||||| |||| |||||||||||||||||||||||||| |||||||||     
T  39477756 ttctaatttatgag-aaaaatataacatataaacataaaatgttaatgatgtttgatcatgaaaacttacttgttattggagtgttgtttgatttgaact 39477854  T
Q  148 tgaagaaaataaggatttggttaattt--gagagtttttggagatttgagatgagaaatgaggaaatgag 215  Q
    ||||| || |  |||||||| | ||||  ||||| |||| ||||||| ||||||||||||||||||||||    
T  39477855 tgaaggaattttggatttgggtgatttgagagagatttttgagattttagatgagaaatgaggaaatgag 39477924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 49 - 211
Target Start/End: Original strand, 8726928 - 8727095
Alignment:
Q  49 ttctaatttaagaggaaaaa--tttaacatataaacataaaag-ttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaa 145  Q
    |||||||||||||| |||||  | ||| ||||||||||||||| |||||| | ||||||||||| |||||||||||||||||||||||||| ||||||||    
T  8726928 ttctaatttaagagaaaaaaaatctaagatataaacataaaaggttaatggtgtttgattatgaaaacttacttgttattggagtgttgtttgatttgaa 8727027  T
Q  146 cctgaagaaaataaggatttggttaattt--gagagtttttggagatttgagatgagaaatgaggaaa 211  Q
    | |||||||| |  |||||||| | ||||  ||||| |||| ||||||| ||||||||||||||||||    
T  8727028 cttgaagaaattttggatttgggtgatttgagagagatttttgagattttagatgagaaatgaggaaa 8727095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 52 - 146
Target Start/End: Original strand, 21615474 - 21615569
Alignment:
Q  52 taatttaagaggaaaaatttaacatataaacataaaag-ttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaac 146  Q
    ||||||||||| |||||| ||||||||||||||| ||| |||||| | ||||||||||| |||||||||||||||| ||||||||| |||||||||    
T  21615474 taatttaagagaaaaaatctaacatataaacatacaaggttaatggtgtttgattatgaaaacttacttgttattgaagtgttgtttgatttgaac 21615569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 72 - 220
Target Start/End: Complemental strand, 18237043 - 18236893
Alignment:
Q  72 aacatataaacataaaag-ttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaacctgaagaaaataaggatttggtta 170  Q
    |||||||||||||||||| |||||| | |||||| |||| |||||||||||||||||||||||||| ||||||||  ||||| || |  | |||||| |     
T  18237043 aacatataaacataaaaggttaatggtgtttgatcatgaaaacttacttgttattggagtgttgtttgatttgaatttgaaggaattttgaatttgggtg 18236944  T
Q  171 atttgagag-tttttggagatttgagatgagaaatgaggaaatgagctgct 220  Q
    |||||||||  |||| ||||||| ||||||||||||| |||| ||| ||||    
T  18236943 atttgagagagtttttgagattttagatgagaaatgaagaaaggaggtgct 18236893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 49 - 206
Target Start/End: Original strand, 7414582 - 7414743
Alignment:
Q  49 ttctaatttaagaggaaaaatttaacatataaacataaaa--gttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaac 146  Q
    |||||||||||||| |||| | || ||||||||||||||   || |||| | ||||||||||| |||||||||||||||||||||||||| |||||||||    
T  7414582 ttctaatttaagagcaaaattctagcatataaacataaataggtcaatggtgtttgattatgaaaacttacttgttattggagtgttgtttgatttgaac 7414681  T
Q  147 ctgaagaaaataaggatttggttaatttgag--agtttttggagatttgagatgagaaatga 206  Q
     ||||| || |  | |||||| | |||||||  || |||| ||||||| ||||| |||||||    
T  7414682 ttgaaggaattttgaatttgggtgatttgagaaagatttttgagattttagatgggaaatga 7414743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 50 - 179
Target Start/End: Complemental strand, 13798815 - 13798685
Alignment:
Q  50 tctaatttaagaggaaaaatttaacatataaacataaaag-ttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaacct 148  Q
    ||||||||||||| |||||| ||||||||||||||||||  |||||| | ||||||||||| | |||||||||||||  ||||||||| ||||||||  |    
T  13798815 tctaatttaagagaaaaaatctaacatataaacataaaaaattaatggtgtttgattatgaaagcttacttgttattatagtgttgtttgatttgaattt 13798716  T
Q  149 gaagaaaataaggatttggttaatttgagag 179  Q
    |||| || |  |||||||| | |||||||||    
T  13798715 gaaggaattttggatttggatgatttgagag 13798685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 50 - 145
Target Start/End: Complemental strand, 28065914 - 28065817
Alignment:
Q  50 tctaatttaagaggaaaaatttaacatataaacataaaa--gttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaa 145  Q
    ||||||||||||| |||| |  ||||||| |||||||||  ||||||| | ||||||||||| |||||||||||||||||||||||||| ||||||||    
T  28065914 tctaatttaagagaaaaattcaaacatatcaacataaaaaggttaatggtgtttgattatgaaaacttacttgttattggagtgttgtttgatttgaa 28065817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 50 - 145
Target Start/End: Complemental strand, 11823976 - 11823879
Alignment:
Q  50 tctaatttaagaggaaaaatttaacatataaacataaaa--gttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaa 145  Q
    ||||||||||||||||||||  ||||||  ||||||||   ||||||||| ||||||||||| | ||||||| |||||||||||||||| ||||||||    
T  11823976 tctaatttaagaggaaaaatcaaacataacaacataaataggttaatgatgtttgattatgaaagcttacttattattggagtgttgtttgatttgaa 11823879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 49 - 152
Target Start/End: Complemental strand, 40592230 - 40592126
Alignment:
Q  49 ttctaatttaagaggaaaaatt-taacatataaacataaaa-gttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaac 146  Q
    |||||||||||||| ||||| | |||||||||||||||||| ||||||| | |||||| ||  ||||||||||||||||| ||||||||| |||||||||    
T  40592230 ttctaatttaagagaaaaaaatataacatataaacataaaaagttaatggtgtttgatcatt-taacttacttgttattgaagtgttgtttgatttgaac 40592132  T
Q  147 ctgaag 152  Q
     |||||    
T  40592131 ttgaag 40592126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 90 - 207
Target Start/End: Original strand, 16887077 - 16887196
Alignment:
Q  90 ttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaacctgaagaaaataaggatttggttaatt--tgagagtttttgga 187  Q
    |||||| | ||||||||||| |||||||||||||||| |||| ||||  | |||||| | |||||| ||||||||||||| |||  ||||||||||||||    
T  16887077 ttaatggtgtttgattatgaaaacttacttgttattgaagtgctgtttaaattgaacttaaagaaattaaggatttggtttatttatgagagtttttgga 16887176  T
Q  188 gatttgagatgagaaatgag 207  Q
    |||   ||||| ||||||||    
T  16887177 gataatagatgtgaaatgag 16887196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 57 - 142
Target Start/End: Complemental strand, 12082549 - 12082462
Alignment:
Q  57 taagaggaaaaatttaacatataaacataaaa--gttaatgatatttgattatgataacttacttgttattggagtgttgttggattt 142  Q
    |||||| |||||| ||| |||| |||||||||  ||||||| | || |||||||| |||||||||||||||||||||||||| |||||    
T  12082549 taagagaaaaaatctaatatatcaacataaaaaggttaatggtgttggattatgaaaacttacttgttattggagtgttgtttgattt 12082462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 52 - 142
Target Start/End: Complemental strand, 18146446 - 18146354
Alignment:
Q  52 taatttaagaggaaaaatttaacatataaacataaaa--gttaatgatatttgattatgataacttacttgttattggagtgttgttggattt 142  Q
    ||||||||| | |||||| || ||||  |||||||||  ||||||| | | ||||||||| |||||||||||||||||||||||||| |||||    
T  18146446 taatttaagtgaaaaaatctatcataccaacataaaaaggttaatggtgtatgattatgaaaacttacttgttattggagtgttgtttgattt 18146354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 49 - 109
Target Start/End: Complemental strand, 47268407 - 47268346
Alignment:
Q  49 ttctaatttaagaggaaaaatttaacatataaacataaaa-gttaatgatatttgattatga 109  Q
    ||||||||||| || || ||| |||||||||||||||||| ||||||| |||||||| ||||    
T  47268407 ttctaatttaaaagaaagaatctaacatataaacataaaaggttaatggtatttgatcatga 47268346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 272 - 316
Target Start/End: Original strand, 7414790 - 7414834
Alignment:
Q  272 gcgtgatttaactcacgctgatttaacacatgtgtgacttaactc 316  Q
    |||||| ||||||||||| || ||||||||||||||| |||||||    
T  7414790 gcgtgagttaactcacgcagaattaacacatgtgtgagttaactc 7414834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 87; Significance: 2e-41; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 49 - 237
Target Start/End: Original strand, 26618053 - 26618244
Alignment:
Q  49 ttctaatttaagaggaaaaatttaacatataaacataaaa--gttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaac 146  Q
    |||||||||||||| |||||| ||||||||||||||||||  ||||||||| ||||||||||| |||||||||| ||||||||||||||| |||||||||    
T  26618053 ttctaatttaagagaaaaaatctaacatataaacataaaaaggttaatgatgtttgattatgaaaacttacttgctattggagtgttgtttgatttgaac 26618152  T
Q  147 ctgaagaaaataaggatttggttaattt--gagagtttttggagatttgagatgagaaatgaggaaatgagctgctgtctgacctttaaaagg 237  Q
     ||||| || |  |||||||| | ||||  ||||| |||||||||||| ||||| |||| ||||||||||| |  ||||||||||||||||||    
T  26618153 ttgaaggaattttggatttggatgatttgagagagattttggagattttagatgtgaaa-gaggaaatgaggttatgtctgacctttaaaagg 26618244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 49 - 210
Target Start/End: Original strand, 21557333 - 21557497
Alignment:
Q  49 ttctaatttaagaggaaaaatttaacatataaacataaaa-gttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaacc 147  Q
    ||||||||||||||||||||| |||||||||||||||||| ||||||||| ||||||||||| ||||||||||||||||||||| |||| |||||||||     
T  21557333 ttctaatttaagaggaaaaatctaacatataaacataaaatgttaatgatgtttgattatgacaacttacttgttattggagtgctgtttgatttgaact 21557432  T
Q  148 tgaagaaaataaggatttggttaattt--gagagtttttggagatttgagatgagaaatgaggaa 210  Q
    |||||||| ||   |||||| | ||||  ||||||||||  | | ||| ||||||||||||||||    
T  21557433 tgaagaaattagaaatttggatgatttgagagagtttttaaatagttgggatgagaaatgaggaa 21557497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 49 - 205
Target Start/End: Complemental strand, 40500929 - 40500770
Alignment:
Q  49 ttctaatttaagaggaaaaatttaacatataaacataaaa-gttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaacc 147  Q
    ||||||||||||||||||||| |||||||||||||||||| |||||||||| |||||||||| |||||| |||||||| |||||||| | ||||| |||     
T  40500929 ttctaatttaagaggaaaaatgtaacatataaacataaaatgttaatgatacttgattatgaaaacttaattgttatttgagtgttggttgatttaaact 40500830  T
Q  148 tgaagaaaataaggatttggttaattt--gagagtttttggagatttgagatgagaaatg 205  Q
    |||||||| |  |||| ||||| ||||  ||||||||||  |||||| ||||| ||||||    
T  40500829 tgaagaaattggggatatggttgatttgagagagtttttaaagattttagatgtgaaatg 40500770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 49 - 152
Target Start/End: Complemental strand, 20147617 - 20147513
Alignment:
Q  49 ttctaatttaagaggaaaaatttaacatataaacataaaag-ttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaacc 147  Q
    |||||||||||||| |||||| ||||||||||||||||||| |||||| | ||||||||||| ||||||||| |||||||||||||||| |||||||||     
T  20147617 ttctaatttaagagaaaaaatctaacatataaacataaaaggttaatggtgtttgattatgaaaacttacttattattggagtgttgtttgatttgaact 20147518  T
Q  148 tgaag 152  Q
    |||||    
T  20147517 tgaag 20147513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 49 - 152
Target Start/End: Complemental strand, 29110665 - 29110561
Alignment:
Q  49 ttctaatttaagaggaaaaatttaacatataaacataaaag-ttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaacc 147  Q
    |||||||||||||| |||||| ||||||||||||||||||| |||||| | ||||||||||| |||||| ||||||||||||||||||| |||||||||     
T  29110665 ttctaatttaagagaaaaaatataacatataaacataaaaggttaatggtgtttgattatgaaaacttatttgttattggagtgttgtttgatttgaact 29110566  T
Q  148 tgaag 152  Q
    |||||    
T  29110565 tgaag 29110561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 49 - 179
Target Start/End: Complemental strand, 16706322 - 16706191
Alignment:
Q  49 ttctaatttaagaggaaaaatttaacatataaacataaaag-ttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaacc 147  Q
    |||||||||||||| |||||| ||||||||||||||||||| |||||| | |||||| |||| ||||||| |||||||||||||||||| |||||||||     
T  16706322 ttctaatttaagagaaaaaatctaacatataaacataaaaggttaatggtgtttgataatgaaaacttacgtgttattggagtgttgtttgatttgaact 16706223  T
Q  148 tgaagaaaataaggatttggttaatttgagag 179  Q
    ||||| || |  |||||||| | |||||||||    
T  16706222 tgaaggaattttggatttgggtgatttgagag 16706191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 64 - 215
Target Start/End: Complemental strand, 32734267 - 32734113
Alignment:
Q  64 aaaaatttaacatataaacataaaag-ttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaacctgaagaaaataagga 162  Q
    |||||| |||||| |||||||||||| |||||| | |||||| |||| |||||||||||||||||||| ||||| ||||||||| ||||| || |  |||    
T  32734267 aaaaatctaacatgtaaacataaaaggttaatggtgtttgatcatgaaaacttacttgttattggagtattgtttgatttgaacttgaaggaattttgga 32734168  T
Q  163 tttggttaattt--gagagtttttggagatttgagatgagaaatgaggaaatgag 215  Q
    ||||| | ||||  ||||| |||| ||||||| ||||||||||||||||||||||    
T  32734167 tttgggtgatttgagagagatttttgagattttagatgagaaatgaggaaatgag 32734113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 49 - 155
Target Start/End: Original strand, 5307063 - 5307170
Alignment:
Q  49 ttctaatttaagaggaaaaatttaacatataaacataaaa-gttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaacc 147  Q
    ||||||||| ||||||||||| |||||||||||||||||| || |||  || |||||||||| |||||||||||||||||||||||| | |||||||||     
T  5307063 ttctaatttcagaggaaaaatgtaacatataaacataaaatgtcaatagtacttgattatgaaaacttacttgttattggagtgttggttgatttgaact 5307162  T
Q  148 tgaagaaa 155  Q
    ||||||||    
T  5307163 tgaagaaa 5307170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 64 - 152
Target Start/End: Complemental strand, 29906064 - 29905975
Alignment:
Q  64 aaaaatttaacatataaacataaaag-ttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaacctgaag 152  Q
    |||||| ||||||||||||||||||| |||||| | |||||| |||| |||||||||||||||||||||||||| ||||||||| |||||    
T  29906064 aaaaatctaacatataaacataaaaggttaatggtgtttgatcatgaaaacttacttgttattggagtgttgtttgatttgaacttgaag 29905975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 50 - 133
Target Start/End: Complemental strand, 18878141 - 18878056
Alignment:
Q  50 tctaatttaagaggaaaaatttaacatataaacataaaa--gttaatgatatttgattatgataacttacttgttattggagtgtt 133  Q
    |||||||||||||||||||  ||||||||||||||||||  ||||||| | ||||||||||| ||||||||||| |||||||||||    
T  18878141 tctaatttaagaggaaaaagctaacatataaacataaaaaagttaatggtgtttgattatgaaaacttacttgtgattggagtgtt 18878056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 49 - 179
Target Start/End: Original strand, 42241808 - 42241938
Alignment:
Q  49 ttctaatttaagaggaaaaatttaacatataaacataaaag-ttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaacc 147  Q
    |||||||||| ||| ||||||  |||||||||||||||||| |||||| | |||||| |||| |||||| ||||||||||||||||||| |||||||||     
T  42241808 ttctaatttatgag-aaaaatacaacatataaacataaaaggttaatggtgtttgatcatgaaaacttaattgttattggagtgttgtttgatttgaact 42241906  T
Q  148 tgaagaaaataaggatttggttaatttgagag 179  Q
    | ||| || |  |||||||| | |||||||||    
T  42241907 taaaggaattttggatttgggtgatttgagag 42241938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 327 - 383
Target Start/End: Complemental strand, 5726898 - 5726842
Alignment:
Q  327 cattttcggaagtttgattggaagtgagtaaaacttgttggaagaagagcatttttc 383  Q
    |||||||||||||||| |||  |||||||||||||||||||||||||||||||||||    
T  5726898 cattttcggaagtttggttgtgagtgagtaaaacttgttggaagaagagcatttttc 5726842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 49 - 122
Target Start/End: Complemental strand, 37058538 - 37058464
Alignment:
Q  49 ttctaatttaagaggaaaaatttaacatataaacataaaa-gttaatgatatttgattatgataacttacttgtt 122  Q
    ||||||||||||||||||||| |||||||||||||||||| || |||| || | |||||||| ||||||||||||    
T  37058538 ttctaatttaagaggaaaaatgtaacatataaacataaaatgtcaatggtaatggattatgaaaacttacttgtt 37058464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 64 - 144
Target Start/End: Original strand, 27651379 - 27651461
Alignment:
Q  64 aaaaatttaacatataaacataaaag--ttaatgatatttgattatgataacttacttgttattggagtgttgttggatttga 144  Q
    |||||| |||||||| |||||||||   |||||| ||||||||||||| ||||||||| |||||||| ||||||| |||||||    
T  27651379 aaaaatctaacatatcaacataaaaagattaatggtatttgattatgaaaacttacttattattggaatgttgtttgatttga 27651461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 293 - 383
Target Start/End: Complemental strand, 11805009 - 11804919
Alignment:
Q  293 tttaacacatgtgtgacttaactcacactgggaacattttcggaagtttgattggaagtgagtaaaacttgttggaagaagagcatttttc 383  Q
    ||||| |||||||||| ||||||||| || ||   ||||||| ||||||| || | ||| ||||||||||| ||| |||||||||||||||    
T  11805009 tttaatacatgtgtgagttaactcacgctaggggtattttcgaaagtttggttaggagtaagtaaaacttgctgggagaagagcatttttc 11804919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 49 - 88
Target Start/End: Original strand, 20530344 - 20530383
Alignment:
Q  49 ttctaatttaagaggaaaaatttaacatataaacataaaa 88  Q
    |||||||| |||||||||||| ||||||||||||||||||    
T  20530344 ttctaattaaagaggaaaaatgtaacatataaacataaaa 20530383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 328 - 383
Target Start/End: Original strand, 34233636 - 34233691
Alignment:
Q  328 attttcggaagtttgattggaagtgagtaaaacttgttggaagaagagcatttttc 383  Q
    ||||| ||||||||| ||||||||||| ||||| || ||||||||||| |||||||    
T  34233636 attttgggaagtttggttggaagtgagcaaaacgtgatggaagaagagaatttttc 34233691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 274 - 354
Target Start/End: Original strand, 26618254 - 26618334
Alignment:
Q  274 gtgatttaactcacgctgatttaacacatgtgtgacttaactcacactgggaacattttcggaagtttgattggaagtgag 354  Q
    |||| ||||||||| ||| ||||||||||| |||| ||||||||| |  ||  ||||||| |||||||| |||| ||||||    
T  26618254 gtgagttaactcacactggtttaacacatgcgtgagttaactcacgccaggggcattttcagaagtttggttgggagtgag 26618334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 86; Significance: 8e-41; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 50 - 254
Target Start/End: Complemental strand, 24559496 - 24559282
Alignment:
Q  50 tctaatttaagaggaaaaatttaacatataaacataaaa-gttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaacct 148  Q
    ||||||||||||||||| || |||||||||||||||||| ||||||  | ||||||||||| |||||||||||||||| ||||||||| |||||||||      
T  24559496 tctaatttaagaggaaatatctaacatataaacataaaatgttaatagtgtttgattatgaaaacttacttgttattgaagtgttgtttgatttgaactg 24559397  T
Q  149 gaagaaaataaggatttggttaatttg--agagtttttggagatttgagatg-------agaaatgaggaaatgagctgctgtctgacctttaaaagggt 239  Q
    ||||||| || |||||||||| |||||  ||||||||||||||||| |||||        ||||||||||||| ||||| ||||||| ||||||||||      
T  24559396 gaagaaattagggatttggttgatttgaaagagtttttggagattttagatgtgaaagaggaaatgaggaaataagctgttgtctgatctttaaaaggac 24559297  T
Q  240 acacaatgtgactta 254  Q
    || ||||||||||||    
T  24559296 acgcaatgtgactta 24559282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 49 - 220
Target Start/End: Complemental strand, 800664 - 800489
Alignment:
Q  49 ttctaatttaagaggaaaaatttaacatataaacataaaag-ttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaacc 147  Q
    ||||||||| |||| |||||| ||||||  ||||||||| | |||||| | |||||| |||| |||||||||||||||||||||||||| |||||||||     
T  800664 ttctaattttagagaaaaaatctaacatgcaaacataaatggttaatggtgtttgatcatgaaaacttacttgttattggagtgttgtttgatttgaact 800565  T
Q  148 tgaagaaaataaggatttggttaatttgagag---tttttggagatttgagatgagaaatgaggaaatgagctgct 220  Q
    ||||| || |  |||||||| | |||||||||   ||||| ||||||| |||||||||||||||||||||||||||    
T  800564 tgaaggaattttggatttgggtgatttgagagagattttttgagattttagatgagaaatgaggaaatgagctgct 800489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 52 - 262
Target Start/End: Complemental strand, 20243804 - 20243598
Alignment:
Q  52 taatttaagaggaaaaatttaacatataaacataaaa-gttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaacctga 150  Q
    |||||||||| ||||||| |||||||||||| ||||| ||||| | ||||||||||||  ||||||       ||||||||||| | ||||||||| |||    
T  20243804 taatttaagaagaaaaatctaacatataaacctaaaatgttaaaggtatttgattatgtaaactta-------ttggagtgttggttgatttgaacttga 20243712  T
Q  151 agaaaataaggatttggttaatttgagagtttttg--gagatttgagatgagaaatgaggaaatgagctgctgtctgacctttaaaagggtacacaatgt 248  Q
    ||||| ||  ||||| ||| |||||||||  ||||  ||||||| | ||| |||||||||||||||| || |||||||  ||||||||| ||||||| ||    
T  20243711 agaaattagagatttagttgatttgagagagtttgtagagattttaaatgtgaaatgaggaaatgagttgttgtctgatttttaaaaggatacacaacgt 20243612  T
Q  249 gacttaactcacat 262  Q
    ||||||||||||||    
T  20243611 gacttaactcacat 20243598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 52 - 262
Target Start/End: Complemental strand, 22137788 - 22137582
Alignment:
Q  52 taatttaagaggaaaaatttaacatataaacataaaa-gttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaacctga 150  Q
    |||||||||| ||||||| |||||||||||| ||||| ||||| | ||||||||||||  ||||||       ||||||||||| | ||||||||| |||    
T  22137788 taatttaagaagaaaaatctaacatataaacctaaaatgttaaaggtatttgattatgtaaactta-------ttggagtgttggttgatttgaacttga 22137696  T
Q  151 agaaaataaggatttggttaatttgagagtttttg--gagatttgagatgagaaatgaggaaatgagctgctgtctgacctttaaaagggtacacaatgt 248  Q
    ||||| ||  ||||| ||| |||||||||  ||||  ||||||| | ||| |||||||||||||||| || |||||||  ||||||||| ||||||| ||    
T  22137695 agaaattagagatttagttgatttgagagagtttgtagagattttaaatgtgaaatgaggaaatgagttgttgtctgatttttaaaaggatacacaacgt 22137596  T
Q  249 gacttaactcacat 262  Q
    ||||||||||||||    
T  22137595 gacttaactcacat 22137582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 52 - 236
Target Start/End: Complemental strand, 5570767 - 5570582
Alignment:
Q  52 taatttaagaggaaaaatttaacatataaacataaaa-gttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaacctga 150  Q
    |||||||||||||||||| |||||||||||||||||| |||||||   |||||||| || |||||||||||||||||||||||||| ||||||||| |||    
T  5570767 taatttaagaggaaaaatctaacatataaacataaaatgttaatgtcgtttgattacgaaaacttacttgttattggagtgttgtttgatttgaacttga 5570668  T
Q  151 agaaaataaggatttggttaatttgagagtttttggagatttgagatgagaaatgaggaaatgagctgctgtctgacctttaaaag 236  Q
    |  || || | |||||| | ||||||||    ||  |||| ||| |  ||||||||||||||||| || ||||||  |||||||||    
T  5570667 aagaattatgaatttgggtgatttgagaaagattttagatgtgaaaaaagaaatgaggaaatgagttgatgtctggtctttaaaag 5570582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 50 - 146
Target Start/End: Original strand, 3098084 - 3098182
Alignment:
Q  50 tctaatttaagaggaaaaatttaacatataaacataaaa--gttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaac 146  Q
    ||||||||||||| |||||| ||||| ||||| ||||||  ||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||||    
T  3098084 tctaatttaagagaaaaaatataacacataaatataaaaaggttaatgatgtttgattatgaaaacttacttgttattggagtgttgtttgatttgaac 3098182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 49 - 210
Target Start/End: Complemental strand, 34208425 - 34208260
Alignment:
Q  49 ttctaatttaagaggaaaaatttaacatataaacataaaa-gttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaacc 147  Q
    |||| |||||||||||||||| ||| |||  ||||||||| ||||||| || |||||||||| ||||||||||||||||||| |||||| |||||||||     
T  34208425 ttcttatttaagaggaaaaatgtaaaataacaacataaaatgttaatggtacttgattatgaaaacttacttgttattggagcgttgtt-gatttgaact 34208327  T
Q  148 tgaagaaaataaggatttggttaatttgagag----tttttggagatttgagatgagaaatgaggaa 210  Q
    |||||||| | ||| ||| | | |||||||||    ||||| ||||||| ||||| |||||||||||    
T  34208326 tgaagaaattgagggttttgatgatttgagagattttttttagagattttagatgtgaaatgaggaa 34208260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 49 - 198
Target Start/End: Complemental strand, 19242436 - 19242284
Alignment:
Q  49 ttctaatttaagaggaaaaatttaacatataaacataaaa-gttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaacc 147  Q
    ||||||||||||||||||||| |||||||||||||||||| || |||| || || |||||||  |||||||| |||||| ||||||| | |||||||||     
T  19242436 ttctaatttaagaggaaaaatgtaacatataaacataaaatgtcaatggtacttaattatgaatacttacttattattgcagtgttggttgatttgaact 19242337  T
Q  148 tgaagaaaataaggatttggttaattt--gagagtttttggagatttgagatg 198  Q
    ||||||||   | ||||||| | ||||  |||||||||| ||||||| |||||    
T  19242336 tgaagaaatcgaagatttggatgatttgagagagtttttagagattttagatg 19242284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 54 - 149
Target Start/End: Original strand, 18744543 - 18744640
Alignment:
Q  54 atttaagaggaaaaatttaacatataaacataaaa--gttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaacctg 149  Q
    |||||||||||||||| |||  |||||||||||||  ||| ||| | ||||||||||| |||||||||||||||||||| ||||| ||||||||||||    
T  18744543 atttaagaggaaaaatctaagttataaacataaaaaggttgatgttgtttgattatgaaaacttacttgttattggagttttgtttgatttgaacctg 18744640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 49 - 131
Target Start/End: Complemental strand, 12026717 - 12026634
Alignment:
Q  49 ttctaatttaagaggaaaaatttaacatataaacataaa-agttaatgatatttgattatgataacttacttgttattggagtg 131  Q
    ||||||||||||||||||| | |||||||||||||||||  || |||| || | |||||||  |||||||||||||||| ||||    
T  12026717 ttctaatttaagaggaaaattataacatataaacataaactgtcaatggtaatggattatggaaacttacttgttattgaagtg 12026634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 49 - 131
Target Start/End: Complemental strand, 12033637 - 12033554
Alignment:
Q  49 ttctaatttaagaggaaaaatttaacatataaacataaa-agttaatgatatttgattatgataacttacttgttattggagtg 131  Q
    ||||||||||||||||||| | |||||||||||||||||  || |||| || | |||||||  |||||||||||||||| ||||    
T  12033637 ttctaatttaagaggaaaattataacatataaacataaactgtcaatggtaatggattatggaaacttacttgttattgaagtg 12033554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 122 - 211
Target Start/End: Complemental strand, 4286639 - 4286548
Alignment:
Q  122 tattggagtgttgttggatttgaacctgaagaaaataaggatttggttaatttgagagt--ttttggagatttgagatgagaaatgaggaaa 211  Q
    ||||||||||||||| ||||||||| ||||| || |   ||||||| | |||||||||   |||| ||||||| ||||||||||||||||||    
T  4286639 tattggagtgttgtttgatttgaacttgaaggaatttttgatttggatgatttgagagagatttttgagattttagatgagaaatgaggaaa 4286548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 85 - 151
Target Start/End: Original strand, 446093 - 446159
Alignment:
Q  85 aaaagttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaacctgaa 151  Q
    ||||||||||| | ||||| ||||| ||||||||| |||||| ||| ||||| ||||||||| ||||    
T  446093 aaaagttaatggtgtttgactatgaaaacttacttattattgaagtattgtttgatttgaacttgaa 446159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 111 - 145
Target Start/End: Complemental strand, 28050846 - 28050812
Alignment:
Q  111 aacttacttgttattggagtgttgttggatttgaa 145  Q
    |||||||||||||||||||||||||| ||||||||    
T  28050846 aacttacttgttattggagtgttgtttgatttgaa 28050812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 72; Significance: 2e-32; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 64 - 215
Target Start/End: Complemental strand, 40414220 - 40414066
Alignment:
Q  64 aaaaatttaacatataaacataaaag-ttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaacctgaagaaaataagga 162  Q
    |||||| ||||||||||||||||||| |||||| | |||||| |||| |||||||||||||||||||||||||| ||||||||| ||||| || |  |||    
T  40414220 aaaaatataacatataaacataaaaggttaatggtgtttgatcatgaaaacttacttgttattggagtgttgtttgatttgaacttgaaggaattttgga 40414121  T
Q  163 tttggttaatttg--agagtttttggagatttgagatgagaaatgaggaaatgag 215  Q
    ||||| | |||||  |||| |||| ||||||| ||||||||||||||||||||||    
T  40414120 tttgggtgatttgaaagagatttttgagattttagatgagaaatgaggaaatgag 40414066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 49 - 152
Target Start/End: Complemental strand, 16575194 - 16575090
Alignment:
Q  49 ttctaatttaagaggaaaaatttaacatataaacataaaag-ttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaacc 147  Q
    |||||||||||||| |||||| |||||||||||||| |||| |||||| | ||||||||||| || ||||||||||||||||||||||| |||||||||     
T  16575194 ttctaatttaagagaaaaaatctaacatataaacatgaaaggttaatggtgtttgattatgaaaaattacttgttattggagtgttgtttgatttgaact 16575095  T
Q  148 tgaag 152  Q
    |||||    
T  16575094 tgaag 16575090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 52 - 211
Target Start/End: Original strand, 14998692 - 14998855
Alignment:
Q  52 taatttaagaggaaaaatttaacatataaacataaaa--gttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaacctg 149  Q
    |||||||| ||||||||| ||||||| ||||||||||  ||||||| | ||||||||||| ||||||||||||||||||||||||||  |||| ||| ||    
T  14998692 taatttaacaggaaaaatctaacatacaaacataaaaaggttaatggtgtttgattatgaaaacttacttgttattggagtgttgttttattttaacttg 14998791  T
Q  150 aagaaaataaggatttggttaattt--gagagtttttggagatttgagatgagaaatgaggaaa 211  Q
    ||| || |  | | ||||  |||||  ||||| |||||||||||| ||||| ||||||||||||    
T  14998792 aaggaattttgaagttggacaatttgagagagattttggagattttagatgggaaatgaggaaa 14998855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 50 - 179
Target Start/End: Original strand, 22843916 - 22844046
Alignment:
Q  50 tctaatttaagaggaaaaatttaacatataaacataaaagtt-aatgatatttgattatgataacttacttgttattggagtgttgttggatttgaacct 148  Q
    |||||||||||||||||||| ||||||||||||||||||  | || |  | |||||||||| ||||||||| |||||||||||||| | ||||||||| |    
T  22843916 tctaatttaagaggaaaaatgtaacatataaacataaaatatcaacggcacttgattatgaaaacttacttattattggagtgttggttgatttgaactt 22844015  T
Q  149 gaagaaaataaggatttggttaatttgagag 179  Q
    ||||||| |  |||||||| | |||||||||    
T  22844016 gaagaaattggggatttggatgatttgagag 22844046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 63 - 145
Target Start/End: Complemental strand, 43692628 - 43692545
Alignment:
Q  63 gaaaaatttaacatataaacataaaag-ttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaa 145  Q
    ||||||| ||||||||||||||||||| |||||| | |||||| |||| |||||||||||||||||||||||||| ||||||||    
T  43692628 gaaaaatataacatataaacataaaaggttaatggtgtttgatcatgaaaacttacttgttattggagtgttgtttgatttgaa 43692545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 49 - 88
Target Start/End: Original strand, 32109527 - 32109566
Alignment:
Q  49 ttctaatttaagaggaaaaatttaacatataaacataaaa 88  Q
    |||||||||||||| |||||| ||||||||||||||||||    
T  32109527 ttctaatttaagagaaaaaatgtaacatataaacataaaa 32109566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 75 - 215
Target Start/End: Original strand, 12785816 - 12785958
Alignment:
Q  75 atataaacataaaagtt-aatgatatttgattatgataacttacttgttattggagtgttgttggatttgaacctgaagaaaataaggatttggttaatt 173  Q
    ||||||||||||||  | |||| || |||||||||| ||||||||||||||| ||||| ||   ||||||||| ||| | ||||  ||  |||| |||||    
T  12785816 atataaacataaaatatcaatggtaattgattatgaaaacttacttgttattcgagtggtgggtgatttgaacttgatg-aaatttggggttggataatt 12785914  T
Q  174 tgagag--tttttggagatttgagatgagaaatgaggaaatgag 215  Q
    ||||||  ||||| |||||||||||||  |||||  ||||||||    
T  12785915 tgagagtttttttagagatttgagatgtaaaatggagaaatgag 12785958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0489 (Bit Score: 57; Significance: 2e-23; HSPs: 1)
Name: scaffold0489
Description:

Target: scaffold0489; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 49 - 213
Target Start/End: Complemental strand, 7657 - 7491
Alignment:
Q  49 ttctaatttaagaggaaaaatttaacatataaacataaaa-gttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaacc 147  Q
    ||||||| ||||||||||||||||||||||||| |||||| ||||||| | | ||||| ||| ||||||||||||| |||||||||||| |||||||||     
T  7657 ttctaatctaagaggaaaaatttaacatataaaaataaaaggttaatggtgtctgattttgaaaacttacttgttactggagtgttgtttgatttgaact 7558  T
Q  148 tgaagaaaataaggatttggttaattt--gagagtttttggagatttgagatgagaaatgaggaaatg 213  Q
    || |  || |  |||||| ||| ||||  ||||| |||||||||||| ||||| |||| |||||||||    
T  7557 tgtaagaattttggatttagttgatttgagagagattttggagattttagatgtgaaa-gaggaaatg 7491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 49 - 145
Target Start/End: Complemental strand, 39422 - 39325
Alignment:
Q  49 ttctaatttaagaggaaaaatttaacatataaacataaaagttaa-tgatatttgattatgataacttacttgttattggagtgttgttggatttgaa 145  Q
    |||||||||||||  |||||| ||||||||||| ||||||| ||| |||| ||||||||||| ||||||||||| |||| ||||||||| ||||||||    
T  39422 ttctaatttaagacaaaaaatctaacatataaatataaaaggtaaatgatgtttgattatgaaaacttacttgtgattgaagtgttgtttgatttgaa 39325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294 (Bit Score: 44; Significance: 9e-16; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 49 - 131
Target Start/End: Complemental strand, 620 - 537
Alignment:
Q  49 ttctaatttaagaggaaaaatttaacatataaacat-aaaagttaatgatatttgattatgataacttacttgttattggagtg 131  Q
    ||||||||||||||||||||| |||||||||||||| ||| || |||| || | |||||||| ||||| |||||||||||||||    
T  620 ttctaatttaagaggaaaaatgtaacatataaacatcaaatgtcaatggtaatggattatgaaaactttcttgttattggagtg 537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0121 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 52 - 208
Target Start/End: Complemental strand, 4833 - 4680
Alignment:
Q  52 taatttaagaggaaaaatttaacatataaacataaaagttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaacctgaa 151  Q
    ||||||||||| |||||| |||||||| ||    || ||||||| | ||||||||||| |||||||||||||||||||||||||| ||||||||  ||||    
T  4833 taatttaagagaaaaaatctaacatatcaa----aaggttaatggtgtttgattatgaaaacttacttgttattggagtgttgtt-gatttgaagttgaa 4739  T
Q  152 gaaaataaggatttggttaattt--gagagtttttggagatttgagatgagaaatgagg 208  Q
    | || |  |||| ||| | ||||  ||||| |||| ||||||| ||||| |||||||||    
T  4738 ggaattttggatctgggtgatttgagagagatttttgagattttagatgggaaatgagg 4680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 272 - 384
Target Start/End: Complemental strand, 36264 - 36152
Alignment:
Q  272 gcgtgatttaactcacgctgatttaacacatgtgtgacttaactcacactgggaacattttcggaagtttgattggaagtgagtaaaacttgttggaaga 371  Q
    |||||| |||||||||||    ||||||||||  ||| |||||||||||  ||  |||||||| |||||||||||| |||||  |||||||||||  |||    
T  36264 gcgtgacttaactcacgccaggttaacacatgcttgagttaactcacaccagggtcattttcgaaagtttgattgggagtgaacaaaacttgttgagaga 36165  T
Q  372 agagcatttttcg 384  Q
    |||||||||||||    
T  36164 agagcatttttcg 36152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0591 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0591
Description:

Target: scaffold0591; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 49 - 131
Target Start/End: Complemental strand, 2300 - 2217
Alignment:
Q  49 ttctaatttaagaggaaaaatttaacatataaacataaaa-gttaatgatatttgattatgataacttacttgttattggagtg 131  Q
    ||||||| ||||||||||||| |||||||||||||||||| || ||||||| |  ||||||| ||||||||| || ||||||||    
T  2300 ttctaatataagaggaaaaatgtaacatataaacataaaatgtcaatgataatgaattatgaaaacttacttattgttggagtg 2217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University