View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19305_high_12 (Length: 554)
Name: NF19305_high_12
Description: NF19305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19305_high_12 |
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Alignment Details
Target: chr4 (Bit Score: 479; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 479; E-Value: 0
Query Start/End: Original strand, 10 - 539
Target Start/End: Complemental strand, 49279309 - 49278779
Alignment:
| Q |
10 |
acatcatcagctccagattcaagagaagaaagggcgatgtttttggtgaaatggctcaacttggaggctttctctggagagttgggtgatgttagcttag |
109 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49279309 |
acatcatcagctccagattcaagagaagaaagggcgatgcttttggtgaaatggctcaacttggaggctttctctggagagttgggtgatgttagcttag |
49279210 |
T |
|
| Q |
110 |
tcctgcctaagctgcccaagaagcgacagaagagactaaaagtggctgcccaagatggttcttttagaattgaagaatttttcgactatcgattccctga |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49279209 |
tcctgcctaagctgcccaagaagcgacagaagagactaaaagtggctgcccaagatggttcttttagaattgaagaatttttcgactatcgattccctga |
49279110 |
T |
|
| Q |
210 |
ggaaactcaggcaacccatctcaagaagcaaaaattgtcatgtagtgtggcttgattctgttattaactggaaaatagtgtagcttcagaagcttagtca |
309 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
49279109 |
ggaaactcaggcaacccatctcaagaagcaaaaattgtcatgtagtgtggcttgattctgttattaaccggaaaatagtgtagcttcagaagcttagtca |
49279010 |
T |
|
| Q |
310 |
atttagttcatactgtaaagtttgt-aattggtttattatttggaaaaagtttgtaaaatagaagtctatttgaggaacatctgctttcctaacattgta |
408 |
Q |
| |
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|||||||||||||| |||||||||| |||| |||| ||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |
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| T |
49279009 |
atttagttcatactataaagtttgtaaattagtttcttatttggaaaaagtttgtaaaatagaagtccatttgagggacatctgctttcctaacattgta |
49278910 |
T |
|
| Q |
409 |
aattgtgattttaatcaatatttattaaagcagaattgtttaaggttatcgaaagtaaattattgattgtacattgcttataactaatttttctgtgagt |
508 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| |||| |||||||||||||||||| |
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| T |
49278909 |
aattgtgattttaatcaatatttattaaagcagaactgtttaaggttaccgaaagtaaattattgattgtacattgattatcactaatttttctgtgagt |
49278810 |
T |
|
| Q |
509 |
aacatgtttggatttgaaactaaaagaaaat |
539 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
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| T |
49278809 |
aacatgtttggatttgaaactaaaagaaaat |
49278779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 10 - 247
Target Start/End: Complemental strand, 49275743 - 49275503
Alignment:
| Q |
10 |
acatcatcagctccagattcaagagaagaaagggcgatgtttttggtgaaatggctcaacttggaggctttctctggagagttgggtgatgttagcttag |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| |||||||||||||||||||||||||| | |
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| T |
49275743 |
acatcatcagctccagattcaagagaagaaagggcgatgcttttggtgaaatggcttaacttggaggcttcatctggagagttgggtgatgttagcttgg |
49275644 |
T |
|
| Q |
110 |
tcctgcctaagctgcccaagaagcgacagaaga---gactaaaagtggctgcccaagatggttcttttagaattgaagaatttttcgactatcgattccc |
206 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| ||| |||| | || || |||||||||||| ||||||||||||||||||| ||||||||||||| |
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| T |
49275643 |
tcctgcctaagctgcccaagaagcaacagaagaagagacgaaaacttactaccgaagatggttcttctagaattgaagaatttttcaactatcgattccc |
49275544 |
T |
|
| Q |
207 |
tgaggaaactcaggcaacccatctcaagaagcaaaaattgt |
247 |
Q |
| |
|
|||||||||||||| || |||||||||||||||||| |||| |
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| T |
49275543 |
tgaggaaactcaggtaaaccatctcaagaagcaaaagttgt |
49275503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 340 - 533
Target Start/End: Complemental strand, 49275483 - 49275304
Alignment:
| Q |
340 |
gtttattatttggaaaaagtttgtaaaatagaagtctatttgaggaacatctgctttcctaacattgtaaattgtgattttaatcaatatttattaaagc |
439 |
Q |
| |
|
|||| ||||||||||||||||||||| | ||| || |||||||||||||||||||||||||||||||||||||||| |||| |||||| |
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| T |
49275483 |
gtttcttatttggaaaaagtttgtaacagagacgtgcctttgaggaacatctgctttcctaacattgtaaattgtgat-----------tttagtaaagc |
49275395 |
T |
|
| Q |
440 |
agaattgtttaaggttatcgaaagtaaattattgattgtaca-ttgcttataactaatttttctgtgagtaacatgtttggatttgaaactaaaa |
533 |
Q |
| |
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|| |||||||| ||| |||||||||||||||||||||||| ||||||||||||| | |||| |||||| |||||||| |||||||||||||| |
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| T |
49275394 |
ag---tgtttaagtttaccgaaagtaaattattgattgtacatttgcttataactactctttcagtgagttacatgttt-aatttgaaactaaaa |
49275304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 58; Significance: 4e-24; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 12 - 133
Target Start/End: Original strand, 34790491 - 34790612
Alignment:
| Q |
12 |
atcatcagctccagattcaagagaagaaagggcgatgtttttggtgaaatggctcaacttggaggctttctctggagagttgggtgatgttagcttagtc |
111 |
Q |
| |
|
||||||||||||| || || |||||||||||| ||| | |||| ||||||||||||||||||||||| ||||| ||| | |||||||| ||||||||| |
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| T |
34790491 |
atcatcagctccaattttaaaagaagaaagggcaatgctattggagaaatggctcaacttggaggcttcatctggggagctaggtgatgtcagcttagtc |
34790590 |
T |
|
| Q |
112 |
ctgcctaagctgcccaagaagc |
133 |
Q |
| |
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| | |||||||||||||||||| |
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| T |
34790591 |
cagtctaagctgcccaagaagc |
34790612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 377 - 413
Target Start/End: Complemental strand, 26696341 - 26696305
Alignment:
| Q |
377 |
atttgaggaacatctgctttcctaacattgtaaattg |
413 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||| |
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| T |
26696341 |
atttgaggaacatctgctttcctaacattgtgaattg |
26696305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 175 - 234
Target Start/End: Original strand, 34790868 - 34790927
Alignment:
| Q |
175 |
agaattgaagaatttttcgactatcgattccctgaggaaactcaggcaacccatctcaag |
234 |
Q |
| |
|
||||| |||||||| ||||||||| ||||||||||||||| ||| ||||| |||||||| |
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|
| T |
34790868 |
agaatcgaagaattcatcgactatctattccctgaggaaacacagacaaccaatctcaag |
34790927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 58; Significance: 4e-24; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 12 - 133
Target Start/End: Complemental strand, 2288282 - 2288161
Alignment:
| Q |
12 |
atcatcagctccagattcaagagaagaaagggcgatgtttttggtgaaatggctcaacttggaggctttctctggagagttgggtgatgttagcttagtc |
111 |
Q |
| |
|
|||||||||||| |||| || |||||||||||| ||| | || | ||||||||||||||||||||||| ||||| ||| | |||||||| ||||||||| |
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| T |
2288282 |
atcatcagctccggatttaaaagaagaaagggcaatgctattagagaaatggctcaacttggaggcttcatctggggagctaggtgatgtcagcttagtc |
2288183 |
T |
|
| Q |
112 |
ctgcctaagctgcccaagaagc |
133 |
Q |
| |
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| | |||||||||||||||||| |
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| T |
2288182 |
cagtctaagctgcccaagaagc |
2288161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 175 - 235
Target Start/End: Complemental strand, 2287905 - 2287845
Alignment:
| Q |
175 |
agaattgaagaatttttcgactatcgattccctgaggaaactcaggcaacccatctcaaga |
235 |
Q |
| |
|
||||| ||||||||| ||||||||| ||||||||||||||| || ||||| ||||||||| |
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|
| T |
2287905 |
agaatcgaagaatttatcgactatctattccctgaggaaacgcatacaaccaatctcaaga |
2287845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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