View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19305_high_14 (Length: 524)

Name: NF19305_high_14
Description: NF19305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19305_high_14
NF19305_high_14
[»] chr4 (6 HSPs)
chr4 (3-510)||(11091004-11091510)
chr4 (1-510)||(11079669-11080174)
chr4 (168-291)||(9606266-9606389)
chr4 (222-280)||(11112646-11112704)
chr4 (18-91)||(9607325-9607398)
chr4 (239-280)||(11123928-11123969)
[»] chr2 (4 HSPs)
chr2 (147-340)||(9751134-9751328)
chr2 (189-291)||(8691771-8691874)
chr2 (24-93)||(8691964-8692033)
chr2 (18-53)||(29758390-29758425)
[»] scaffold0098 (1 HSPs)
scaffold0098 (146-340)||(50319-50514)
[»] chr1 (1 HSPs)
chr1 (146-340)||(127272-127467)
[»] chr3 (1 HSPs)
chr3 (158-291)||(498688-498822)
[»] chr8 (2 HSPs)
chr8 (184-340)||(6637515-6637672)
chr8 (235-340)||(17899136-17899240)
[»] chr5 (1 HSPs)
chr5 (146-291)||(12316877-12317016)
[»] chr6 (1 HSPs)
chr6 (216-291)||(20743646-20743721)


Alignment Details
Target: chr4 (Bit Score: 304; Significance: 1e-171; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 3 - 510
Target Start/End: Original strand, 11091004 - 11091510
Alignment:
Q  3 caacaaacagtttcctttttcacatatattagcatatgaagtaaattgctcaatcagtttgatgttattgttgaatataggtgtgttattatgctgatgc 102  Q
    |||||||||||||||||||||||||||||||||||| ||||||  ||| ||||||||||||||| |||||| ||| ||  |||| || |||| || | |     
T  11091004 caacaaacagtttcctttttcacatatattagcataagaagtat-ttggtcaatcagtttgatggtattgtcgaaaat--gtgtttttttatccttacgt 11091100  T
Q  103 attctacttttgttgttctaagcttgaactct----ggaatcatagcctctaactaatattcacatgacagaatattagatatagttatcttacatagtt 198  Q
    |||||||||||||||||||||||||||| |||    | |||| ||||||||||  | ||| | |||| |||||||| ||||||||||||||| |||||||    
T  11091101 attctacttttgttgttctaagcttgaagtctatttgaaatcttagcctctaaagagtat-ctcatggcagaatatgagatatagttatcttgcatagtt 11091199  T
Q  199 gaatatttctcctagtatttttgtgtttgatcaattatatggttttgtagattgagtcaaagttgaaggaggcaactacaaggcttgagaaacgactgaa 298  Q
     |||||||| |||| ||||| |||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| |||||||||||| |    
T  11091200 taatatttcccctactatttatgtgttcgatcaattatatggttttttagattgagtcaaagttgaaggaggcaactacaacgctggagaaacgactgga 11091299  T
Q  299 agaagagcaagctgcaagtttaaaagcagaagacaatgcaaagttggctcaagagaaatcagacgatgaaatacgaaaactaaggaagcatcttgaggag 398  Q
    ||||||||||| |||||| |||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| |||||    
T  11091300 agaagagcaagttgcaagattaaaagcagaagaaaatgcaaagttggctcaagagaaatcagccgatgaaatacgagaactaaggaagcatcttaaggag 11091399  T
Q  399 gcgcaagaagaactccgcaagcgaggtggtcagggttgtgccattctatgatctggtagcgctacttcaaactttcaaagatttgtttaaattttcttcc 498  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||    
T  11091400 gcgcaagaagaactccgcaagcgaggtggtcagggttgtgctattctatgatctggt-gcgctacttcaaactttcaatgatttgtttaaattttcttcc 11091498  T
Q  499 ggattatgaaat 510  Q
    ||||||||||||    
T  11091499 ggattatgaaat 11091510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 510
Target Start/End: Original strand, 11079669 - 11080174
Alignment:
Q  1 gccaacaaacagtttcctttttcacatatattagcatatgaagtaaattgctcaatcagtttgatgttattgttgaatataggtgtgttattatgctgat 100  Q
    |||||||||||||||||||||||||||||| ||||||| ||||||| || |||||||||||||||||||||||     |||        | |||    ||    
T  11079669 gccaacaaacagtttcctttttcacatataatagcataggaagtaatttactcaatcagtttgatgttattgtc----ata--------aatat----at 11079752  T
Q  101 gcattctacttttgttgttctaagcttgaactctg----gaatcatagcctctaactaatattcacatgacagaatattagatatagttatcttacatag 196  Q
    ||||||||||||| |||||||| ||||||||||||    ||||| ||||||| || || ||||||||||||||||||| |||||||||||||||| ||||    
T  11079753 gcattctacttttattgttctatgcttgaactctgtttggaatcttagcctcgaaatagtattcacatgacagaatatgagatatagttatcttatatag 11079852  T
Q  197 ttgaatatttctcctagtatttttgtgtttgatcaattatatggttttgtagattgagtcaaagttgaaggaggcaactacaaggcttgagaaacgactg 296  Q
    |||||||||||||||| ||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||    
T  11079853 ttgaatatttctcctaatatttttttgtttgatcaattgtatggttttgtagattgagtcaaagttgaaggaggcaactacaaggcttgagaaacaattg 11079952  T
Q  297 aaagaagagcaagctgcaagtttaaaagcagaagacaatgcaaagttggctcaagagaaatcagacgatgaaatacgaaaactaaggaagcatcttgagg 396  Q
      ||||||||| ||||||||  ||| ||||||||| | ||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||     
T  11079953 gcagaagagcaggctgcaagactaagagcagaagatagtgcaaagttagctcaaaagaaatcagacgatgaaatacgaaaactaaggaagcatcttgaga 11080052  T
Q  397 aggcgcaagaagaactccgcaagcgaggtggtcaggg---ttgtgccattctatgatctggtagcg----ctacttcaaactttcaaagatttgtttaaa 489  Q
    ||||||| |||||||||||||||||||||| | ||||   ||||||||||||||||||| |||||     ||||||||||||||| ||||||||||||||    
T  11080053 aggcgcatgaagaactccgcaagcgaggtgataaggggggttgtgccattctatgatctagtagcaagcactacttcaaactttcgaagatttgtttaaa 11080152  T
Q  490 ttttcttcc-ggattatgaaat 510  Q
    ||||||||| ||||||||||||    
T  11080153 ttttcttccgggattatgaaat 11080174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 168 - 291
Target Start/End: Complemental strand, 9606389 - 9606266
Alignment:
Q  168 agaatattagatatagttatcttacatagttgaatatttctcctagtat-ttttgtgtttgatcaattatatggttttgtagattgagtcaaagttgaag 266  Q
    ||||||| |||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| || ||||||| ||    
T  9606389 agaatatgagatatagctatcttacataattgaatatttctcctagtattttttgtgtttgatcaatcatatggttttgtagattgggtaaaagttg-ag 9606291  T
Q  267 gaggcaactacaaggcttgagaaac 291  Q
     ||||||| ||||||||||||||||    
T  9606290 aaggcaacgacaaggcttgagaaac 9606266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 222 - 280
Target Start/End: Original strand, 11112646 - 11112704
Alignment:
Q  222 tgtttgatcaattatatggttttgtagattgagtcaaagttgaaggaggcaactacaag 280  Q
    ||||||||||||||||||||||||||| ||||||||||||||| ||| |||||||||||    
T  11112646 tgtttgatcaattatatggttttgtaggttgagtcaaagttgagggaagcaactacaag 11112704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 18 - 91
Target Start/End: Complemental strand, 9607398 - 9607325
Alignment:
Q  18 tttttcacatatattagcatatgaagtaaattgctcaatcagtttgatgttattgttgaatataggtgtgttat 91  Q
    |||| |||||||||||||||||| ||||| |||||| |||||||| |||||||||| ||| ||| |||| ||||    
T  9607398 ttttccacatatattagcatatgcagtaatttgctccatcagtttaatgttattgtcgaaaatatgtgtattat 9607325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 239 - 280
Target Start/End: Original strand, 11123928 - 11123969
Alignment:
Q  239 ggttttgtagattgagtcaaagttgaaggaggcaactacaag 280  Q
    |||||||||| ||||||||||||||| ||| |||||||||||    
T  11123928 ggttttgtaggttgagtcaaagttgagggaagcaactacaag 11123969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 103; Significance: 5e-51; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 147 - 340
Target Start/End: Original strand, 9751134 - 9751328
Alignment:
Q  147 tctaactaatattcacatgacagaatattagatatagttatcttacatagttgaatatttctcctagtatttt-tgtgtttgatcaattatatggttttg 245  Q
    ||||| || |||||||||| |||||||| | |||||||||||||| |||  |||||||||||| | ||||||| ||||||||| |||| |||||||||||    
T  9751134 tctaaatagtattcacatggcagaatatgaaatatagttatcttatataagtgaatatttctcatggtattttttgtgtttgaccaatcatatggttttg 9751233  T
Q  246 tagattgagtcaaagttgaaggaggcaactacaaggcttgagaaacgactgaaagaagagcaagctgcaagtttaaaagcagaagacaatgcaaa 340  Q
    |||||||||||||||||||||||||||||| ||||||||||||||| | ||  ||||||||||||||||||  ||| ||||||||||| ||||||    
T  9751234 tagattgagtcaaagttgaaggaggcaactgcaaggcttgagaaacaattggcagaagagcaagctgcaagactaagagcagaagacagtgcaaa 9751328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 189 - 291
Target Start/End: Complemental strand, 8691874 - 8691771
Alignment:
Q  189 ttacatagttgaatatttctcctagta-tttttgtgtttgatcaattatatggttttgtagattgagtcaaagttgaaggaggcaactacaaggcttgag 287  Q
    ||||||| ||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| ||||||||||||    
T  8691874 ttacataattgaatatttctcctagtaatttttgtgtttgatcaatcatatggttttgtagattgagtcaaagttgaagaaggcaacgacaaggcttgag 8691775  T
Q  288 aaac 291  Q
    ||||    
T  8691774 aaac 8691771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 24 - 93
Target Start/End: Complemental strand, 8692033 - 8691964
Alignment:
Q  24 acatatattagcatatgaagtaaattgctcaatcagtttgatgttattgttgaatataggtgtgttatta 93  Q
    ||||||||||||||||||||||| |||||| |||||||| |||||||||| ||| ||| |||| ||||||    
T  8692033 acatatattagcatatgaagtaatttgctccatcagtttaatgttattgtcgaaaatatgtgtattatta 8691964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 53
Target Start/End: Original strand, 29758390 - 29758425
Alignment:
Q  18 tttttcacatatattagcatatgaagtaaattgctc 53  Q
    ||||||||||||||||||||||||||||| ||||||    
T  29758390 tttttcacatatattagcatatgaagtaatttgctc 29758425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0098 (Bit Score: 100; Significance: 3e-49; HSPs: 1)
Name: scaffold0098
Description:

Target: scaffold0098; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 146 - 340
Target Start/End: Complemental strand, 50514 - 50319
Alignment:
Q  146 ctctaactaatattcacatgacagaatattagatatagttatcttacatagttgaatatttctcctagtattttt-gtgtttgatcaattatatggtttt 244  Q
    |||||| || ||||||||||  ||||||| || |||| |||||||||||| |||||||||||||||  | ||||| ||||||||||||| ||||||||||    
T  50514 ctctaaatagtattcacatggtagaatatgagctataattatcttacataattgaatatttctcctttttttttttgtgtttgatcaatcatatggtttt 50415  T
Q  245 gtagattgagtcaaagttgaaggaggcaactacaaggcttgagaaacgactgaaagaagagcaagctgcaagtttaaaagcagaagacaatgcaaa 340  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||| | ||  ||||||||||||||||||  ||| |||| |||||| ||||||    
T  50414 gtagattgagtcaaaattgaaggaggcaactacaaggcttgagaaacaattggcagaagagcaagctgcaagactaagagcaaaagacattgcaaa 50319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 92; Significance: 2e-44; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 146 - 340
Target Start/End: Complemental strand, 127467 - 127272
Alignment:
Q  146 ctctaactaatattcacatgacagaatattagatatagttatcttacatagttgaatatttctcctagtattttt-gtgtttgatcaattatatggtttt 244  Q
    |||||| || ||||||||||  ||| ||| |||||||||||| ||||| | ||||||| ||| |||| ||||||| ||||||||||||| ||||||||||    
T  127467 ctctaaatagtattcacatggtagagtatgagatatagttatattacacaattgaatacttcccctaatattttttgtgtttgatcaatcatatggtttt 127368  T
Q  245 gtagattgagtcaaagttgaaggaggcaactacaaggcttgagaaacgactgaaagaagagcaagctgcaagtttaaaagcagaagacaatgcaaa 340  Q
    |||||||||||||||||||||||||| |||||||||||||||||||| | ||  ||||||||| ||| ||||  ||| ||||||||||| ||||||    
T  127367 gtagattgagtcaaagttgaaggaggaaactacaaggcttgagaaacaattggcagaagagcaggctacaagactaagagcagaagacattgcaaa 127272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 91; Significance: 7e-44; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 158 - 291
Target Start/End: Complemental strand, 498822 - 498688
Alignment:
Q  158 ttcacatgacagaatattagatatagttatcttacatagttgaatatttctcctagtattttt-gtgtttgatcaattatatggttttgtagattgagtc 256  Q
    ||||||||  ||||||| |||||||||||||||||||| |||||| |||||| |||||||||| |||| |||||||| ||||||||||||||||||||||    
T  498822 ttcacatggtagaatatgagatatagttatcttacataattgaatttttctcatagtattttttgtgtctgatcaatcatatggttttgtagattgagtc 498723  T
Q  257 aaagttgaaggaggcaactacaaggcttgagaaac 291  Q
    ||||||||||||||||||||||||| |||||||||    
T  498722 aaagttgaaggaggcaactacaaggattgagaaac 498688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 90; Significance: 3e-43; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 184 - 340
Target Start/End: Complemental strand, 6637672 - 6637515
Alignment:
Q  184 ttatcttacatagttgaatatttctcctagtattttt-gtgtttgatcaattatatggttttgtagattgagtcaaagttgaaggaggcaactacaaggc 282  Q
    ||||||| | || |||||||||||||||| ||||||| ||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||    
T  6637672 ttatctttcctaattgaatatttctcctactattttttgtgtttgatcaatcatatggttttgtagatttagtcaaagttgaaggaggcaactacaaggc 6637573  T
Q  283 ttgagaaacgactgaaagaagagcaagctgcaagtttaaaagcagaagacaatgcaaa 340  Q
    ||||||||| | ||  ||||||||||||||||||  ||| ||| ||||||| ||||||    
T  6637572 ttgagaaacaattggcagaagagcaagctgcaagactaagagctgaagacattgcaaa 6637515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 235 - 340
Target Start/End: Complemental strand, 17899240 - 17899136
Alignment:
Q  235 atatggttttgtagattgagtcaaagttgaaggaggcaactacaaggcttgagaaacgactgaaagaagagcaagctgcaagtttaaaagcagaagacaa 334  Q
    |||||||||||||||||||||  |||||||||| || |||||||||| ||||||||| | ||  ||||||||| ||||||||  ||| |||| ||||||     
T  17899240 atatggttttgtagattgagttgaagttgaagg-ggaaactacaaggtttgagaaacaattggcagaagagcacgctgcaagaataagagcataagacag 17899142  T
Q  335 tgcaaa 340  Q
    ||||||    
T  17899141 tgcaaa 17899136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 78; Significance: 4e-36; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 146 - 291
Target Start/End: Original strand, 12316877 - 12317016
Alignment:
Q  146 ctctaactaatattcacatgacagaatattagatatagttatcttacatagttgaatatttctcctagtatttttgtgtttgatcaattatatggttttg 245  Q
    |||||| || ||||||||||  ||||||| |||||||||||||||||||| |||||||||||| ||||||||||| ||| |     ||  ||||||||||    
T  12316877 ctctaaatagtattcacatggtagaatatgagatatagttatcttacataattgaatatttcttctagtattttt-tgtgt-----atcgtatggttttg 12316970  T
Q  246 tagattgagtcaaagttgaaggaggcaactacaaggcttgagaaac 291  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  12316971 tagattgagtcaaagttgaaggaggcaactacaaggcttgagaaac 12317016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 216 - 291
Target Start/End: Complemental strand, 20743721 - 20743646
Alignment:
Q  216 tttttgtgtttgatcaattatatggttttgtagattgagtcaaagttgaaggaggcaactacaaggcttgagaaac 291  Q
    ||||||||||| |||||| |||||||||||||||||| || |||||||||| |||| |||||||||||||||||||    
T  20743721 tttttgtgtttcatcaatcatatggttttgtagattgggtaaaagttgaagaaggcgactacaaggcttgagaaac 20743646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University