View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19305_high_17 (Length: 471)
Name: NF19305_high_17
Description: NF19305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19305_high_17 |
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Alignment Details
Target: chr4 (Bit Score: 419; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 17 - 455
Target Start/End: Original strand, 34356750 - 34357188
Alignment:
| Q |
17 |
aaaaggcacatgaacacaccgctataacttcatcaaggatttctctatccaaattcttgggcacaaaaccagatccaataccatgaattatgtgaggtcc |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34356750 |
aaaaggcacatgaacacaccgctataacttcatcaaggatttttttatccaaattcttgggcacaaaaccagatccaataccatgaattatgtgaggtcc |
34356849 |
T |
|
| Q |
117 |
tgtgatttagcaggaaaaaataaatagataattgctctttaaaggaaataacatattagacttggaattgtagaaacttattctatttcttacctggctt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34356850 |
tgtgatttagcaggaaaaaataaatagataattgctctttaaaggaaataacatattagacttggaattgtagaaacttattctatttcttacctggctt |
34356949 |
T |
|
| Q |
217 |
tccacctgaaagtacgttgcattccagaggctctacaccgatacactgattgatacatagagaataaaatggtaaacggaaatcaacaagctaggtagaa |
316 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
34356950 |
tccacctgaaagtacgttgcattcgagaggctctacaccgatacactgattgatacatagagaataaaatgttaaacggaaatcaacaagctaggtagaa |
34357049 |
T |
|
| Q |
317 |
agcttctcttgagaatgatttacctttatttttggattttgttgttttaggaatctaccagctccagaaagagttccaccagttccaattcccgcgacta |
416 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
34357050 |
agcttctcttgagaatgatttacctttatttttggattttgttgttttaggaatctaccagctccagaaagagttccaccagttccaattcccacgacta |
34357149 |
T |
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| Q |
417 |
aaatatctacttttccttttgtatctttccatatctctg |
455 |
Q |
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| T |
34357150 |
aaatatctacttttccttttgtatctttccatatctctg |
34357188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 28 - 455
Target Start/End: Original strand, 34351391 - 34351816
Alignment:
| Q |
28 |
gaacacaccgctataacttcatcaaggatttctctatccaaattcttgggcacaaaaccagatccaataccatgaattatgtgaggtcctgtgatttagc |
127 |
Q |
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||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| ||||||||||| |||||||||||||||| |
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| T |
34351391 |
gaacagaccgctataacttcatcaaggatttctttatccaaattcttgggcacaaaaccagctccaataccctgaattatgtgcggtcctgtgatttagc |
34351490 |
T |
|
| Q |
128 |
aggaaaaaataaatagataattgctctttaaaggaaataacatattagacttggaattgtagaaacttattctatttcttacctggctttccacctgaaa |
227 |
Q |
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|||||||||||||||||||| |||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||||| ||||||||| ||||||| |
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| T |
34351491 |
aggaaaaaataaatagataaaagctctttaaaagaaataacataatagacttggaattgtagaaacttattttatttcttacgtggctttcctcctgaaa |
34351590 |
T |
|
| Q |
228 |
gtacgttgcattccagaggctctacaccgatacactgattgatacatagagaataaaatggtaaacggaaatcaacaagctaggtagaaagcttctcttg |
327 |
Q |
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||| ||||| ||| |||||||||||||||||||||| ||||||||| ||||||||||||| |||| ||||||||||||||||||| ||||||||||||| |
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| T |
34351591 |
gtatgttgctttcgagaggctctacaccgatacactaattgatacagagagaataaaatgttaaatggaaatcaacaagctaggt--aaagcttctcttg |
34351688 |
T |
|
| Q |
328 |
agaatgatttacctttatttttggattttgttgttttaggaatctaccagctccagaaagagttccaccagttccaattcccgcgactaaaatatctact |
427 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34351689 |
agaatgatttacctttatttttggattttgttgttttaggaatctaccagctccagaaagagttccaccagttccaattcccgcgactaaaatatctact |
34351788 |
T |
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| Q |
428 |
tttccttttgtatctttccatatctctg |
455 |
Q |
| |
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|||||||||||||||||||||||||||| |
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| T |
34351789 |
tttccttttgtatctttccatatctctg |
34351816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 22 - 255
Target Start/End: Original strand, 34365903 - 34366138
Alignment:
| Q |
22 |
gcacatgaacacaccgctataacttcatcaaggatttctctatccaaattcttgggcacaaaaccagatccaataccatgaattatgtgaggtcctgtga |
121 |
Q |
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||||| ||||| |||||||||||||||||||| | |||| |||||||||| ||||||||||||||| |||||||| |||||| |||||||||||||| |
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| T |
34365903 |
gcacaagaacagaccgctataacttcatcaagcacttcttcatccaaattcctgggcacaaaaccagccccaataccctgaattttgtgaggtcctgtgg |
34366002 |
T |
|
| Q |
122 |
tttagcaggaaaaaataaatagataattgctctt-------taaaggaaataacatattagacttggaattgtagaaacttattctatttcttacctggc |
214 |
Q |
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|||||||| ||||| |||||||||| |||||| || | || || ||||| |||||||| || ||||||||| ||||||||||||||| |
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| T |
34366003 |
tttagcagaaaaaaggaaatagataaaagctcttttgaaaatataaaaattatgatattggacttggattt---gaaacttat--tatttcttacctggc |
34366097 |
T |
|
| Q |
215 |
tttccacctgaaagtacgttgcattccagaggctctacacc |
255 |
Q |
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|||||||||||||||| ||||| ||| |||||||||||||| |
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| T |
34366098 |
tttccacctgaaagtatgttgctttcgagaggctctacacc |
34366138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 325 - 455
Target Start/End: Original strand, 34366334 - 34366464
Alignment:
| Q |
325 |
ttgagaatgatttacctttatttttggattttgttgttttaggaatctaccagctccagaaagagttccaccagttccaattcccgcgactaaaatatct |
424 |
Q |
| |
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||||||||||||||||| || ||||| |||||||||||||||||||| ||| | |||||||| ||||||||||||||||| || || |||||||||||| |
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| T |
34366334 |
ttgagaatgatttacctgtacttttgaattttgttgttttaggaatcgaccggttccagaaatggttccaccagttccaatccctgcaactaaaatatct |
34366433 |
T |
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| Q |
425 |
acttttccttttgtatctttccatatctctg |
455 |
Q |
| |
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| ||| ||| ||||||||| ||||||||||| |
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| T |
34366434 |
attttgcctcttgtatcttcccatatctctg |
34366464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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