View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19305_high_20 (Length: 415)
Name: NF19305_high_20
Description: NF19305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19305_high_20 |
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Alignment Details
Target: chr1 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 1 - 403
Target Start/End: Complemental strand, 37329064 - 37328665
Alignment:
| Q |
1 |
tgattccatttcgtgtaaatcatcccattcctccgtattttgcaccgactcccccaatgccgcaagaaaatcatcgccgcagtgttcaacagtgataaag |
100 |
Q |
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| T |
37329064 |
tgattccatttcgtgtaaatcatcccattcctccgtattttgcaccgactcccccaatgccgcaagaaaatcatcgccgcagtgttcaacagtgataaag |
37328965 |
T |
|
| Q |
101 |
tcacgaccatcgtcaccttgaataataataatcgcttaattaaataatctattaattgagtgaatatgaaagtgaaatagttagtcattaagcaccgtag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
37328964 |
tcacgaccatcgtcaccttgaataataataatcgcttaattaaataatctattaattgagtgaatatgaaagtgaaatagttagtcattaagtaccgtag |
37328865 |
T |
|
| Q |
201 |
agagagacgagacgatcgaaacattggtttgcggcgagttcgtcgaagccgagttcgagagctaaactgattaatcgaactttttctaattccaaatcgt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37328864 |
agagagacgagacgatcgaaacattggtttgcggcgagttcgtcgaagccgagttcgagagctaaactgattaatcgaactttttctaattccaaatcgt |
37328765 |
T |
|
| Q |
301 |
gtttttgttgcttcttcttcttcttcctgctactgcttcccatttccattcccgcgcaacttgannnnnnncttccaattcaattttcaattttgcgctt |
400 |
Q |
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||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
37328764 |
gttgttgttgcttcttctt---cttcctgctactgcttcccatttccattcccgcgcaacttgatttttttcttccaattcaattttcaattttgcgctt |
37328668 |
T |
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