View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19305_high_21 (Length: 399)
Name: NF19305_high_21
Description: NF19305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19305_high_21 |
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| [»] scaffold0019 (1 HSPs) |
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| [»] scaffold0187 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 14 - 336
Target Start/End: Original strand, 11996913 - 11997235
Alignment:
| Q |
14 |
agaaagaatcaagctcagtaattaccttccatcaggcaagtaacgacggatggtaaagggtatctttttctctcgaagctctttcatggcaatctacgaa |
113 |
Q |
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| T |
11996913 |
agaaagaatcaagctcagtaattaccttccatcaggcaagtaacgacggatggtaaagggtatctttttctctcgaagctctttcatggcaatctacgaa |
11997012 |
T |
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| Q |
114 |
gttgagtgaacaagatatcagacatttgtgtccaaaatgtatcaaatggttaagtgatacatgaacaaaaatcccatgcaaactaatgagtttcaaacta |
213 |
Q |
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| T |
11997013 |
gttgagtgaacaagatatcagacatttgtgtccaaaatgtatcaaatggttaagtgatacatgaacaaaaatcccatgcaaactaatgagtttcaaacta |
11997112 |
T |
|
| Q |
214 |
tataaaacaattaataattaatttgggattgatatatggtattggccatccgaaggagatatttacaaacttactattcaaaggtttattagaatccacg |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| ||| |
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| T |
11997113 |
tataaaacaattaataattaatttgggattgatatatggtattggccatccaaaggagatatgtacaaacttactattcaaaggtttattagaatcaacg |
11997212 |
T |
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| Q |
314 |
ttcaatggcaaaagtataaatat |
336 |
Q |
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||||||| ||||||||||||||| |
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| T |
11997213 |
ttcaatgacaaaagtataaatat |
11997235 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 19 - 341
Target Start/End: Complemental strand, 106272 - 105949
Alignment:
| Q |
19 |
gaatcaagctcagtaattaccttccatcaggcaagtaacgacggatggtaaagggtatctttttctctcgaagctctttcatggcaatctacgaagttga |
118 |
Q |
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||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
106272 |
gaatcaagcacagtaattaccttccatcaggcaaataacgacggatggtaaagggtatctttttctctcgaagctctttcatggcaatctgtgaagttga |
106173 |
T |
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| Q |
119 |
gtgaacaagatatcagacatttgtgtccaaaatgtatcaaatggttaagtgatacatgaac-aaaaatcccatgcaaactaatgagtttcaaactatata |
217 |
Q |
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| T |
106172 |
gtgaacaagatatcagacattcacatccaagatgtatcaaattgttaaatgatacatgaacgaaaaatcccatgcaaactaaagaatttgaaattacata |
106073 |
T |
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| Q |
218 |
aaacaattaataattaatttgggattgatatatggtattggccatccgaaggagatatttacaaacttactattcaaaggtttattagaatccacgttca |
317 |
Q |
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||| | |||| ||| ||||||| |||||||||||| ||||||||||| |||||||||||||||| |||| ||||||||||||||| |||||| || |||| |
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| T |
106072 |
aaatagttaaaaatcaatttggaattgatatatggcattggccatccaaaggagatatttacaatcttattattcaaaggtttatcagaatcaacattca |
105973 |
T |
|
| Q |
318 |
atggcaaaagtataaatatgtttt |
341 |
Q |
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| | ||| |||||||||||||||| |
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| T |
105972 |
acgacaatagtataaatatgtttt |
105949 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 30 - 108
Target Start/End: Complemental strand, 36634849 - 36634771
Alignment:
| Q |
30 |
agtaattaccttccatcaggcaagtaacgacggatggtaaagggtatctttttctctcgaagctctttcatggcaatct |
108 |
Q |
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|||| ||||||||||||||||||||| |||||||||||||| || || || |||||| ||||| ||||||||||||| |
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| T |
36634849 |
agtatttaccttccatcaggcaagtagcgacggatggtaaaaggaattttccgctctcgtagctccttcatggcaatct |
36634771 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0187 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: scaffold0187
Description:
Target: scaffold0187; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 341 - 389
Target Start/End: Original strand, 27320 - 27368
Alignment:
| Q |
341 |
tcatgtcaatgacaggatcagctacacctcaactgcctctgttttcatc |
389 |
Q |
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| T |
27320 |
tcatgtcaataacaggatcagctacaccccaactacctctgtcttcatc |
27368 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0187; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 341 - 389
Target Start/End: Original strand, 6664 - 6712
Alignment:
| Q |
341 |
tcatgtcaatgacaggatcagctacacctcaactgcctctgttttcatc |
389 |
Q |
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|||||||||| ||||||||||||||||| ||||| ||||| | |||||| |
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| T |
6664 |
tcatgtcaataacaggatcagctacaccccaacttcctctatcttcatc |
6712 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0187; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 341 - 389
Target Start/End: Original strand, 16992 - 17040
Alignment:
| Q |
341 |
tcatgtcaatgacaggatcagctacacctcaactgcctctgttttcatc |
389 |
Q |
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|||||||||| ||||||||||||||||| ||||| ||||| | |||||| |
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| T |
16992 |
tcatgtcaataacaggatcagctacaccccaacttcctctatcttcatc |
17040 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 341 - 389
Target Start/End: Complemental strand, 37855584 - 37855536
Alignment:
| Q |
341 |
tcatgtcaatgacaggatcagctacacctcaactgcctctgttttcatc |
389 |
Q |
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|||||||||| ||||||||||||||||| ||||| ||||||| |||||| |
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| T |
37855584 |
tcatgtcaataacaggatcagctacaccccaactacctctgtcttcatc |
37855536 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 341 - 389
Target Start/End: Complemental strand, 37867772 - 37867724
Alignment:
| Q |
341 |
tcatgtcaatgacaggatcagctacacctcaactgcctctgttttcatc |
389 |
Q |
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|||||||||| ||||||||||||||||| ||||| ||||||| |||||| |
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| T |
37867772 |
tcatgtcaataacaggatcagctacaccccaactacctctgtcttcatc |
37867724 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 341 - 389
Target Start/End: Complemental strand, 37881812 - 37881764
Alignment:
| Q |
341 |
tcatgtcaatgacaggatcagctacacctcaactgcctctgttttcatc |
389 |
Q |
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|||||||||| ||||||||||||||||| ||||| ||||||| |||||| |
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| T |
37881812 |
tcatgtcaataacaggatcagctacaccccaactacctctgtcttcatc |
37881764 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 341 - 389
Target Start/End: Complemental strand, 37911757 - 37911709
Alignment:
| Q |
341 |
tcatgtcaatgacaggatcagctacacctcaactgcctctgttttcatc |
389 |
Q |
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|||||||||| ||||||||||||||||| ||||| ||||||| |||||| |
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| T |
37911757 |
tcatgtcaataacaggatcagctacaccccaactacctctgtcttcatc |
37911709 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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