View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19305_high_22 (Length: 396)

Name: NF19305_high_22
Description: NF19305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19305_high_22
NF19305_high_22
[»] chr1 (2 HSPs)
chr1 (18-385)||(33861508-33861885)
chr1 (18-385)||(33919037-33919414)


Alignment Details
Target: chr1 (Bit Score: 317; Significance: 1e-179; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 18 - 385
Target Start/End: Complemental strand, 33861885 - 33861508
Alignment:
Q  18 ctctatatcttcttgatcttttcacttgtagggcattattctgaactcaatttgaaatgactatagagtagagtactgatacatttgtattttctcatgt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33861885 ctctatatcttcttgatcttttcacttgtagggcattattctgaactcaatttgaaatgactatagagtagagtactgatacatttgtattttctcatgt 33861786  T
Q  118 aaagtccataacaccttctcaatgtaatttcgttgagacaaccacaattttaccattcatattgtcacaactcacaagtaattctcatgccaaggatttt 217  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  33861785 aaagtccataacaccttctcaatgtaattgcgttgagacaaccacaattt-accattcatattgtcacaactcacaagtaattctcatgccaaggatttt 33861687  T
Q  218 ctttgcataaccaaagttcttcattgcaaaagacttgcttaaatcttgcaagacaagaacaacctaacgagatctacatcttttatccttctaccctcta 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| ||||    
T  33861686 ctttgcataaccaaagttcttcattgcaaaagacttgcttaaatcttgcaagacaagaacaacctaatgagatctacatcttttatccttttaccttcta 33861587  T
Q  318 ccacttaag-----------aagtggtctattttacttgttagttttatacaactttagttttaaggtagtcaaatatt 385  Q
    |||||||||           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33861586 ccacttaagaaattttgtttaagtggtctattttacttgttagttttatacaactttagttttaaggtagtcaaatatt 33861508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 18 - 385
Target Start/End: Original strand, 33919037 - 33919414
Alignment:
Q  18 ctctatatcttcttgatcttttcacttgtagggcattattctgaactcaatttgaaatgactatagagtagagtactgatacatttgtattttctcatgt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33919037 ctctatatcttcttgatcttttcacttgtagggcattattctgaactcaatttgaaatgactatagagtagagtactgatacatttgtattttctcatgt 33919136  T
Q  118 aaagtccataacaccttctcaatgtaatttcgttgagacaaccacaattttaccattcatattgtcacaactcacaagtaattctcatgccaaggatttt 217  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  33919137 aaagtccataacaccttctcaatgtaattgcgttgagacaaccacaattt-accattcatattgtcacaactcacaagtaattctcatgccaaggatttt 33919235  T
Q  218 ctttgcataaccaaagttcttcattgcaaaagacttgcttaaatcttgcaagacaagaacaacctaacgagatctacatcttttatccttctaccctcta 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| ||||    
T  33919236 ctttgcataaccaaagttcttcattgcaaaagacttgcttaaatcttgcaagacaagaacaacctaatgagatctacatcttttatccttttaccttcta 33919335  T
Q  318 ccacttaag-----------aagtggtctattttacttgttagttttatacaactttagttttaaggtagtcaaatatt 385  Q
    |||||||||           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33919336 ccacttaagaaattttgtttaagtggtctattttacttgttagttttatacaactttagttttaaggtagtcaaatatt 33919414  T

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