View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19305_high_27 (Length: 373)

Name: NF19305_high_27
Description: NF19305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19305_high_27
NF19305_high_27
[»] chr5 (11 HSPs)
chr5 (18-373)||(1428413-1428768)
chr5 (172-304)||(23774798-23774930)
chr5 (172-304)||(23861751-23861883)
chr5 (172-304)||(23754764-23754896)
chr5 (172-304)||(23764985-23765117)
chr5 (172-304)||(23814833-23814965)
chr5 (172-304)||(23820219-23820351)
chr5 (158-304)||(23691137-23691283)
chr5 (267-319)||(20305160-20305212)
chr5 (267-319)||(20309564-20309616)
chr5 (267-319)||(20292300-20292352)
[»] chr3 (24 HSPs)
chr3 (215-324)||(2441222-2441331)
chr3 (219-324)||(988652-988757)
chr3 (215-321)||(996807-996913)
chr3 (215-321)||(1013197-1013303)
chr3 (168-308)||(1931878-1932018)
chr3 (171-301)||(955538-955668)
chr3 (172-321)||(2679149-2679298)
chr3 (170-277)||(1937720-1937827)
chr3 (174-285)||(1941323-1941434)
chr3 (180-307)||(4142862-4142989)
chr3 (215-322)||(13478854-13478961)
chr3 (172-322)||(2697457-2697607)
chr3 (178-292)||(3745166-3745280)
chr3 (173-278)||(1891803-1891908)
chr3 (253-307)||(4158672-4158726)
chr3 (177-278)||(1003688-1003789)
chr3 (237-277)||(803979-804019)
chr3 (225-321)||(2687056-2687152)
chr3 (215-278)||(1021723-1021786)
chr3 (172-274)||(7432842-7432944)
chr3 (240-322)||(37758422-37758504)
chr3 (167-284)||(967856-967973)
chr3 (167-304)||(2458577-2458714)
chr3 (172-293)||(2651151-2651272)
[»] chr4 (2 HSPs)
chr4 (215-322)||(22672849-22672956)
chr4 (171-323)||(20020499-20020651)
[»] chr8 (1 HSPs)
chr8 (166-298)||(19727103-19727235)
[»] chr1 (2 HSPs)
chr1 (217-320)||(51221907-51222013)
chr1 (222-308)||(51382168-51382257)
[»] chr6 (1 HSPs)
chr6 (225-274)||(4183771-4183820)


Alignment Details
Target: chr5 (Bit Score: 328; Significance: 0; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 18 - 373
Target Start/End: Complemental strand, 1428768 - 1428413
Alignment:
Q  18 tcaaatagttagggcaatcaaaaccactccgtttaatctgcaacaatggatgactcaaccaccgccaccaacaaccagctcttgatcaactacggcggaa 117  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  1428768 tcaaatagttagggcaatcaaaaccactccgtttattctgcaacaatggatgactcaaccaccgccaccaacaaccagctctcgatcaactacggcggaa 1428669  T
Q  118 acacaaacatcccctcagccttactctcttctgatgatttacttcatgcgccgtcacttcccactcttcctttcgacatcatttcacaaatcctccatag 217  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  1428668 acacaaacatcccctcagccttactctcttctgatgattcacttcatgcgcagtcacttcccactcttcctttcgacatcatttcacaaatcctccatag 1428569  T
Q  218 gctacccgtgaaactcctccttcaactccgatgcctttgcaaggcatggaattctctaatcactgatctcaaattcgccaagaagcaacttagcatgtca 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1428568 gctacccgtgaaactcctccttcaactccgatgcctttgcaaggcatgtaattctctaatcactgatctcaaattcgccaagaagcaacttagcatgtca 1428469  T
Q  318 accacaccctcaatcacgcgctgcctaagctacagcaattactcatgtaagtacat 373  Q
    ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||    
T  1428468 accacaccctcaatcacccgctgcctaagctacagaaattactcatgtaagtacat 1428413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 172 - 304
Target Start/End: Complemental strand, 23774930 - 23774798
Alignment:
Q  172 cacttcccactcttcctttcgacatcatttcacaaatcctccataggctacccgtgaaactcctccttcaactccgatgcctttgcaaggcatggaattc 271  Q
    ||||||||||| ||||||||||  ||||| || |||| ||||||||||| |||||||||| |||| | ||| | |||||  | ||||||   ||||||||    
T  23774930 cacttcccactattcctttcgatctcattccagaaattctccataggctccccgtgaaacccctcatgcaatttcgatgtgtgtgcaagtggtggaattc 23774831  T
Q  272 tctaatcactgatctcaaattcgccaagaagca 304  Q
    ||||||  |||||| ||| ||||||||||||||    
T  23774830 tctaatttctgatcccaagttcgccaagaagca 23774798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 172 - 304
Target Start/End: Complemental strand, 23861883 - 23861751
Alignment:
Q  172 cacttcccactcttcctttcgacatcatttcacaaatcctccataggctacccgtgaaactcctccttcaactccgatgcctttgcaaggcatggaattc 271  Q
    ||||||||||| ||||||||||  ||||| || |||| ||||||||||| |||||||||| |||| | ||| | |||||  | ||||||   ||||||||    
T  23861883 cacttcccactattcctttcgatctcattccagaaattctccataggctccccgtgaaacccctcatgcaatttcgatgtgtgtgcaagtggtggaattc 23861784  T
Q  272 tctaatcactgatctcaaattcgccaagaagca 304  Q
    ||||||  |||||| ||| ||||||||||||||    
T  23861783 tctaatttctgatcccaagttcgccaagaagca 23861751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 172 - 304
Target Start/End: Complemental strand, 23754896 - 23754764
Alignment:
Q  172 cacttcccactcttcctttcgacatcatttcacaaatcctccataggctacccgtgaaactcctccttcaactccgatgcctttgcaaggcatggaattc 271  Q
    ||||||||||| ||||||||||  ||||| || |||| ||||||||||| ||||||||||  ||| | ||| | |||||  | ||||||   ||||||||    
T  23754896 cacttcccactattcctttcgatctcattccagaaattctccataggctccccgtgaaacctctcatgcaatttcgatgtgtgtgcaagtggtggaattc 23754797  T
Q  272 tctaatcactgatctcaaattcgccaagaagca 304  Q
    ||||||  |||||| ||| ||||||||||||||    
T  23754796 tctaatttctgatcccaagttcgccaagaagca 23754764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 172 - 304
Target Start/End: Complemental strand, 23765117 - 23764985
Alignment:
Q  172 cacttcccactcttcctttcgacatcatttcacaaatcctccataggctacccgtgaaactcctccttcaactccgatgcctttgcaaggcatggaattc 271  Q
    ||||||||||| ||||||||||  ||||| || |||| ||| ||||||| || ||||||| |||| | ||| | |||||  | ||||||   ||||||||    
T  23765117 cacttcccactattcctttcgatctcattccagaaattctctataggctccctgtgaaacccctcatgcaatttcgatgtgtgtgcaagtggtggaattc 23765018  T
Q  272 tctaatcactgatctcaaattcgccaagaagca 304  Q
    ||||||  |||||| ||||||||||||||||||    
T  23765017 tctaatttctgatcccaaattcgccaagaagca 23764985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 172 - 304
Target Start/End: Complemental strand, 23814965 - 23814833
Alignment:
Q  172 cacttcccactcttcctttcgacatcatttcacaaatcctccataggctacccgtgaaactcctccttcaactccgatgcctttgcaaggcatggaattc 271  Q
    ||||||||||| ||||||||||  ||||| || |||| ||| ||||||| || ||||||| |||| | ||| | |||||  | ||||||   ||||||||    
T  23814965 cacttcccactattcctttcgatctcattccagaaattctctataggctccctgtgaaacccctcatgcaatttcgatgtgtgtgcaagtggtggaattc 23814866  T
Q  272 tctaatcactgatctcaaattcgccaagaagca 304  Q
    ||||||  |||||| ||||||||||||||||||    
T  23814865 tctaatttctgatcccaaattcgccaagaagca 23814833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 172 - 304
Target Start/End: Complemental strand, 23820351 - 23820219
Alignment:
Q  172 cacttcccactcttcctttcgacatcatttcacaaatcctccataggctacccgtgaaactcctccttcaactccgatgcctttgcaaggcatggaattc 271  Q
    ||||||||||| ||||||||||  ||||| || |||| ||||||||||| ||||||||||  ||| | ||| | |||||  | ||||||   ||||||||    
T  23820351 cacttcccactattcctttcgatctcattccagaaattctccataggctccccgtgaaacctctcatgcaatttcgatgtgtgtgcaagtggtggaattc 23820252  T
Q  272 tctaatcactgatctcaaattcgccaagaagca 304  Q
    ||||||  |||||| ||| ||||||||||||||    
T  23820251 tctaatttctgatcccaagttcgccaagaagca 23820219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 158 - 304
Target Start/End: Original strand, 23691137 - 23691283
Alignment:
Q  158 acttcatgcgccgtcacttcccactcttcctttcgacatcatttcacaaatcctccataggctacccgtgaaactcctccttcaactccgatgcctttgc 257  Q
    |||||||||| || ||||||| ||| |||||| |||  ||||| || |||| ||||| ||||| || ||||||| |||| | ||| | |||||  | |||    
T  23691137 acttcatgcgtcgccacttccaactattccttgcgatctcattccataaattctccacaggcttccggtgaaacccctcatgcaatttcgatgtgtgtgc 23691236  T
Q  258 aaggcatggaattctctaatcactgatctcaaattcgccaagaagca 304  Q
    |||   ||||||||||||||  |||||| ||||||||||||||||||    
T  23691237 aagctgtggaattctctaatttctgatcccaaattcgccaagaagca 23691283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 267 - 319
Target Start/End: Original strand, 20305160 - 20305212
Alignment:
Q  267 aattctctaatcactgatctcaaattcgccaagaagcaacttagcatgtcaac 319  Q
    |||||||||||||| |||| |||||||||||||||||| ||| || |||||||    
T  20305160 aattctctaatcaccgatcccaaattcgccaagaagcaccttcgcttgtcaac 20305212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 267 - 319
Target Start/End: Original strand, 20309564 - 20309616
Alignment:
Q  267 aattctctaatcactgatctcaaattcgccaagaagcaacttagcatgtcaac 319  Q
    |||||||||||||| |||| |||||||||||||||||| ||| || |||||||    
T  20309564 aattctctaatcaccgatcccaaattcgccaagaagcaccttcgcttgtcaac 20309616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 267 - 319
Target Start/End: Original strand, 20292300 - 20292352
Alignment:
Q  267 aattctctaatcactgatctcaaattcgccaagaagcaacttagcatgtcaac 319  Q
    ||||||||||||||  ||| |||||||||||||||||| ||| || |||||||    
T  20292300 aattctctaatcaccaatcccaaattcgccaagaagcaccttcgcttgtcaac 20292352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 62; Significance: 1e-26; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 215 - 324
Target Start/End: Original strand, 2441222 - 2441331
Alignment:
Q  215 taggctacccgtgaaactcctccttcaactccgatgcctttgcaaggcatggaattctctaatcactgatctcaaattcgccaagaagcaacttagcatg 314  Q
    ||||||||| ||||| ||||||||||| ||||||||| | |||||| ||||||||||| ||||||| |||| |||||||||||||||||| || ||| ||    
T  2441222 taggctacctgtgaagctcctccttcagctccgatgcttctgcaagtcatggaattctttaatcaccgatcacaaattcgccaagaagcacctcagcttg 2441321  T
Q  315 tcaaccacac 324  Q
    ||||||||||    
T  2441322 tcaaccacac 2441331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 219 - 324
Target Start/End: Original strand, 988652 - 988757
Alignment:
Q  219 ctacccgtgaaactcctccttcaactccgatgcctttgcaaggcatggaattctctaatcactgatctcaaattcgccaagaagcaacttagcatgtcaa 318  Q
    ||||| ||||| |||||||||||||||||||||  ||||||| ||||||||||| ||||| |||||| ||||||||| || ||||| |||||| ||||||    
T  988652 ctacctgtgaagctcctccttcaactccgatgctcttgcaagtcatggaattctttaatctctgatcccaaattcgcaaaaaagcaccttagcctgtcaa 988751  T
Q  319 ccacac 324  Q
    ||||||    
T  988752 ccacac 988757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 215 - 321
Target Start/End: Original strand, 996807 - 996913
Alignment:
Q  215 taggctacccgtgaaactcctccttcaactccgatgcctttgcaaggcatggaattctctaatcactgatctcaaattcgccaagaagcaacttagcatg 314  Q
    ||||||||||||||| |||||||| || |||||||||   |||||| | |||| |||||||||| || ||| |||||| || |||||||| |||||||||    
T  996807 taggctacccgtgaagctcctcctccagctccgatgcgcctgcaagtcctggagttctctaatctctaatcccaaatttgctaagaagcaccttagcatg 996906  T
Q  315 tcaacca 321  Q
    |||||||    
T  996907 tcaacca 996913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 215 - 321
Target Start/End: Original strand, 1013197 - 1013303
Alignment:
Q  215 taggctacccgtgaaactcctccttcaactccgatgcctttgcaaggcatggaattctctaatcactgatctcaaattcgccaagaagcaacttagcatg 314  Q
    ||||||||||||||| |||||||| || |||||||||   |||||| | |||| |||||||||| || ||| |||||| || |||||||| |||||||||    
T  1013197 taggctacccgtgaagctcctcctccagctccgatgcgcctgcaagtcctggagttctctaatctctaatcccaaatttgctaagaagcaccttagcatg 1013296  T
Q  315 tcaacca 321  Q
    |||||||    
T  1013297 tcaacca 1013303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 168 - 308
Target Start/End: Complemental strand, 1932018 - 1931878
Alignment:
Q  168 ccgtcacttcccactcttcctttcgacatcatttcacaaatcctccataggctacccgtgaaactcctccttcaactccgatgcctttgcaaggcatgga 267  Q
    ||||||||||||||||||||||||||  ||||| || ||||||||  ||||||| ||||||| |||||  |   | |||| ||| |||||||| ||| ||    
T  1932018 ccgtcacttcccactcttcctttcgatctcattccagaaatcctctgtaggctatccgtgaagctccttgtgagattccggtgcgtttgcaagtcataga 1931919  T
Q  268 attctctaatcactgatctcaaattcgccaagaagcaactt 308  Q
    ||||||||||| |||| | ||||||||| || || ||||||    
T  1931918 attctctaatctctgaccccaaattcgctaaaaaacaactt 1931878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 171 - 301
Target Start/End: Original strand, 955538 - 955668
Alignment:
Q  171 tcacttcccactcttcctttcgacatcatttcacaaatcctccataggctacccgtgaaactcctccttcaactccgatgcctttgcaaggcatggaatt 270  Q
    |||||||||| ||||||||| ||  || ||||| ||||||||  ||||||||  || || |||||||||||||| |||||| |||| ||| | |||||||    
T  955538 tcacttcccattcttccttttgatctcgtttcagaaatcctctgtaggctacaggtaaagctcctccttcaacttcgatgcgtttgtaagtcttggaatt 955637  T
Q  271 ctctaatcactgatctcaaattcgccaagaa 301  Q
    |||| ||| |||||  ||| |||||||||||    
T  955638 ctcttatctctgattccaacttcgccaagaa 955668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 172 - 321
Target Start/End: Complemental strand, 2679298 - 2679149
Alignment:
Q  172 cacttcccactcttcctttcgacatcatttcacaaatcctccataggctacccgtgaaactcctccttcaactccgatgcctttgcaaggcatggaattc 271  Q
    ||||||||||||||||||||||| ||||  || | || ||   |||| |||  |||||| |||||||||||||||||||  | |||||| ||||||| ||    
T  2679298 cacttcccactcttcctttcgacctcatcccagatatactgtctaggttacaggtgaaattcctccttcaactccgatgtgtctgcaagtcatggaaatc 2679199  T
Q  272 tctaatcactgatctcaaattcgccaagaagcaacttagcatgtcaacca 321  Q
    ||| ||| | ||||  ||||| || |||||||| |||||| |||||||||    
T  2679198 tctgatctccgatccaaaatttgctaagaagcaccttagcgtgtcaacca 2679149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 170 - 277
Target Start/End: Complemental strand, 1937827 - 1937720
Alignment:
Q  170 gtcacttcccactcttcctttcgacatcatttcacaaatcctccataggctacccgtgaaactcctccttcaactccgatgcctttgcaaggcatggaat 269  Q
    ||||||||||||||||||||| ||  ||||| || ||||||||  ||||||| | ||||||||||||||   | |||| ||| |||||||| ||| ||||    
T  1937827 gtcacttcccactcttccttttgatctcattccagaaatcctctctaggctatcggtgaaactcctcctgagattccggtgcgtttgcaagtcatagaat 1937728  T
Q  270 tctctaat 277  Q
    ||||||||    
T  1937727 tctctaat 1937720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 174 - 285
Target Start/End: Complemental strand, 1941434 - 1941323
Alignment:
Q  174 cttcccactcttcctttcgacatcatttcacaaatcctccataggctacccgtgaaactcctccttcaactccgatgcctttgcaaggcatggaattctc 273  Q
    ||||||||||||||||| ||  |||| ||| | ||||||  ||| || |||||||| || ||||||||| |||| ||| |||||||| | ||||||||||    
T  1941434 cttcccactcttcctttggatctcatctcagagatcctctgtagactccccgtgaagcttctccttcaattccggtgcgtttgcaagtcgtggaattctc 1941335  T
Q  274 taatcactgatc 285  Q
    | ||||||||||    
T  1941334 ttatcactgatc 1941323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 180 - 307
Target Start/End: Complemental strand, 4142989 - 4142862
Alignment:
Q  180 actcttcctttcgacatcatttcacaaatcctccataggctacccgtgaaactcctccttcaactccgatgcctttgcaaggcatggaattctctaatca 279  Q
    |||||||||| |||| ||||| || ||||| |   ||||||||| || ||  || |||||| | |||||||  |||||||| ||||||||||||||||      
T  4142989 actcttccttccgacgtcattccagaaatcatatgtaggctaccagtaaagttcatccttcgattccgatgtgtttgcaagtcatggaattctctaatat 4142890  T
Q  280 ctgatctcaaattcgccaagaagcaact 307  Q
    |||||| |||||||| ||||||||||||    
T  4142889 ctgatcccaaattcgtcaagaagcaact 4142862  T

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Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 215 - 322
Target Start/End: Original strand, 13478854 - 13478961
Alignment:
Q  215 taggctacccgtgaaactcctccttcaactccgatgcctttgcaaggcatggaattctctaatcactgatctcaaattcgccaagaagcaacttagcatg 314  Q
    ||||||||||||||| |||||||||||||| |||||  |  | |||   ||||||||| | |||||||||| |||||| ||||| ||||| ||| |||||    
T  13478854 taggctacccgtgaagctcctccttcaacttcgatgtgtcagtaagttgtggaattcttttatcactgatcgcaaatttgccaacaagcatcttcgcatg 13478953  T
Q  315 tcaaccac 322  Q
    ||||||||    
T  13478954 tcaaccac 13478961  T

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Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 172 - 322
Target Start/End: Complemental strand, 2697607 - 2697457
Alignment:
Q  172 cacttcccactcttcctttcgacatcatttcacaaatcctccataggctacccgtgaaactcctccttcaactccgatgcctttgcaaggcatggaattc 271  Q
    ||||||||||||||||||| ||| |||||  | |||| ||   | |||| || |||||  | ||||| ||||| |||||| | || ||| ||||||||||    
T  2697607 cacttcccactcttccttttgacctcattcaagaaatactttgttggctcccagtgaagttactcctacaacttcgatgcgtctgtaagtcatggaattc 2697508  T
Q  272 tctaatcactgatctcaaattcgccaagaagcaacttagcatgtcaaccac 322  Q
    |||||||||||||  ||  ||  |||||||||| |||||||||||||||||    
T  2697507 tctaatcactgataccagttttaccaagaagcaccttagcatgtcaaccac 2697457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 178 - 292
Target Start/End: Original strand, 3745166 - 3745280
Alignment:
Q  178 ccactcttcctttcgacatcatttcacaaatcctccataggctacccgtgaaactcctccttcaactccgatgcctttgcaaggcatggaattctctaat 277  Q
    |||||||||||| |||| ||||| || ||||| |   ||||||||| |||||  || |||||||| |||||||  |||||||| ||||||||||||||||    
T  3745166 ccactcttccttccgacgtcattccagaaatcttatgtaggctaccggtgaagttcatccttcaattccgatgtgtttgcaagtcatggaattctctaat 3745265  T
Q  278 cactgatctcaaatt 292  Q
      |||||| ||||||    
T  3745266 atctgatcccaaatt 3745280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 173 - 278
Target Start/End: Complemental strand, 1891908 - 1891803
Alignment:
Q  173 acttcccactcttcctttcgacatcatttcacaaatcctccataggctacccgtgaaactcctccttcaactccgatgcctttgcaaggcatggaattct 272  Q
    |||||||||||||||||| ||  |||||||| |||| ||   ||| || || ||||| |||||||||||||||||||   | |||||| |||||||||||    
T  1891908 acttcccactcttcctttggatctcatttcagaaattctaactagacttccagtgaagctcctccttcaactccgatctgtctgcaagtcatggaattct 1891809  T
Q  273 ctaatc 278  Q
    ||||||    
T  1891808 ctaatc 1891803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 253 - 307
Target Start/End: Complemental strand, 4158726 - 4158672
Alignment:
Q  253 tttgcaaggcatggaattctctaatcactgatctcaaattcgccaagaagcaact 307  Q
    |||||||| ||||||||||||||||  |||||| |||||||| ||||||||||||    
T  4158726 tttgcaagtcatggaattctctaatatctgatcccaaattcgtcaagaagcaact 4158672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 177 - 278
Target Start/End: Original strand, 1003688 - 1003789
Alignment:
Q  177 cccactcttcctttcgacatcatttcacaaatcctccataggctacccgtgaaactcctccttcaactccgatgcctttgcaaggcatggaattctctaa 276  Q
    |||||||||||||| ||  |||||  | |||||||   |||| |||| ||||| |||||||||||||| ||||||  ||||||| ||||||||| |||||    
T  1003688 cccactcttccttttgaactcattgaagaaatcctagctaggttaccagtgaagctcctccttcaacttcgatgcgcttgcaagtcatggaattttctaa 1003787  T
Q  277 tc 278  Q
    ||    
T  1003788 tc 1003789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 237 - 277
Target Start/End: Complemental strand, 804019 - 803979
Alignment:
Q  237 cttcaactccgatgcctttgcaaggcatggaattctctaat 277  Q
    ||||||||||||||| |||||||| ||||||||||||||||    
T  804019 cttcaactccgatgcgtttgcaagtcatggaattctctaat 803979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 321
Target Start/End: Complemental strand, 2687152 - 2687056
Alignment:
Q  225 gtgaaactcctccttcaactccgatgcctttgcaaggcatggaattctctaatcactgatctcaaattcgccaagaagcaacttagcatgtcaacca 321  Q
    |||||| |||||||||||||||||||  | |||||| ||||||| ||||| ||| | ||||  ||||| || |||||||| |||||  |||||||||    
T  2687152 gtgaaattcctccttcaactccgatgtgtctgcaagtcatggaaatctctgatctccgatccaaaatttgctaagaagcaccttagattgtcaacca 2687056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 215 - 278
Target Start/End: Original strand, 1021723 - 1021786
Alignment:
Q  215 taggctacccgtgaaactcctccttcaactccgatgcctttgcaaggcatggaattctctaatc 278  Q
    |||| |||| ||||| |||||||||||||| ||||||  ||||||| ||||||||| |||||||    
T  1021723 taggttaccagtgaagctcctccttcaacttcgatgcgcttgcaagtcatggaattttctaatc 1021786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 172 - 274
Target Start/End: Complemental strand, 7432944 - 7432842
Alignment:
Q  172 cacttcccactcttcctttcgacatcatttcacaaatcctccataggctacccgtgaaactcctccttcaactccgatgcctttgcaaggcatggaattc 271  Q
    |||| |||||||||||||||||  ||||| || |||| |||  |||||| || ||||| || ||||||||| | |||||| | |||||| | ||||||||    
T  7432944 cactccccactcttcctttcgatctcattacagaaatactctctaggcttccggtgaagcttctccttcaattgcgatgcatctgcaagtcgtggaattc 7432845  T
Q  272 tct 274  Q
    |||    
T  7432844 tct 7432842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 322
Target Start/End: Complemental strand, 37758504 - 37758422
Alignment:
Q  240 caactccgatgcctttgcaaggcatggaattctctaatcactgatctcaaattcgccaagaagcaacttagcatgtcaaccac 322  Q
    |||||||||||||| |||||| | | ||||||| |||||   |||| ||||||||| |||||||| ||| | |||||||||||    
T  37758504 caactccgatgcctctgcaagtccttgaattctttaatcttggatcccaaattcgctaagaagcatcttcgtatgtcaaccac 37758422  T

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Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 284
Target Start/End: Original strand, 967856 - 967973
Alignment:
Q  167 gccgtcacttcccactcttcctttcgacatcatttcacaaatcctccataggctacccgtgaaactcctccttcaactccgatgcctttgcaaggcatgg 266  Q
    |||| ||||||| ||||||||||||||  ||||| || |||| ||   ||||||| | || || |||||| | ||| |||||||  | |||||| | |||    
T  967856 gccgccacttccgactcttcctttcgatctcattccagaaattctatgtaggctatcggtaaagctcctcatgcaattccgatgtgtgtgcaagtcgtgg 967955  T
Q  267 aattctctaatcactgat 284  Q
    ||||||||||||||||||    
T  967956 aattctctaatcactgat 967973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 304
Target Start/End: Original strand, 2458577 - 2458714
Alignment:
Q  167 gccgtcacttcccactcttcctttcgacatcatttcacaaatcctccataggctacccgtgaaactcctccttcaactccgatgcctttgcaaggcatgg 266  Q
    |||| |||| ||||| |||||||||||| |||||    |||||||    |||||||| ||||| |||||||||||||| || ||| | |||||| | |||    
T  2458577 gccgccactccccacacttcctttcgacctcattgtcgaaatcctgggcaggctaccagtgaagctcctccttcaacttcgttgcttatgcaagtcgtgg 2458676  T
Q  267 aattctctaatcactgatctcaaattcgccaagaagca 304  Q
    |||| ||| ||| || ||   |||||||||||||||||    
T  2458677 aattatctgatctctcattctaaattcgccaagaagca 2458714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 293
Target Start/End: Complemental strand, 2651272 - 2651151
Alignment:
Q  172 cacttcccactcttcctttcgacatcatttcacaaatcctccataggctacccgtgaaactcctccttcaactccgatgcctttgcaaggcatggaattc 271  Q
    |||| |||||||||||||||||| | |||  | |||| || | |||| |||| || || |||||| ||||||| |||||  | |||||| ||||||||||    
T  2651272 cactgcccactcttcctttcgaccttattcaagaaattctacgtaggttaccggtaaagctcctctttcaacttcgatgtgtctgcaagccatggaattc 2651173  T
Q  272 tctaatcactgatctcaaattc 293  Q
    ||| ||| | |||| |||||||    
T  2651172 tcttatctccgatcacaaattc 2651151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 215 - 322
Target Start/End: Complemental strand, 22672956 - 22672849
Alignment:
Q  215 taggctacccgtgaaactcctccttcaactccgatgcctttgcaaggcatggaattctctaatcactgatctcaaattcgccaagaagcaacttagcatg 314  Q
    |||| |||| ||||| ||||||||||| |||| ||||   |||||| ||||||||||||||||| |||||| ||||||||| |||||||| |||||| ||    
T  22672956 taggttaccggtgaagctcctccttcagctccaatgcgcctgcaagtcatggaattctctaatctctgatcgcaaattcgctaagaagcaccttagcctg 22672857  T
Q  315 tcaaccac 322  Q
    ||||||||    
T  22672856 tcaaccac 22672849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 171 - 323
Target Start/End: Complemental strand, 20020651 - 20020499
Alignment:
Q  171 tcacttcccactcttcctttcgacatcatttcacaaatcctccataggctacccgtgaaactcctccttcaactccgatgcctttgcaaggcatggaatt 270  Q
    |||||||||| ||||||||||||| |||||  | |||| ||   |||| |||| ||||| |||||||||||||| |||||  | || ||  |||||||||    
T  20020651 tcacttcccattcttcctttcgacctcattgaagaaattctgtgtaggttaccagtgaagctcctccttcaacttcgatgtgtatgtaattcatggaatt 20020552  T
Q  271 ctctaatcactgatctcaaattcgccaagaagcaacttagcatgtcaaccaca 323  Q
    |||| ||| || |||  |||||  |||||||||| ||| ||||||||||||||    
T  20020551 ctctcatctctcatcctaaattttccaagaagcaccttcgcatgtcaaccaca 20020499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 166 - 298
Target Start/End: Original strand, 19727103 - 19727235
Alignment:
Q  166 cgccgtcacttcccactcttcctttcgacatcatttcacaaatcctccataggctacccgtgaaactcctccttcaactccgatgcctttgcaaggcatg 265  Q
    ||||||||||||| ||||||||||||||  ||||| || |||| ||   |||||||||||||||| ||||| | ||  |||||||  |||||||| | |     
T  19727103 cgccgtcacttcctactcttcctttcgatctcattccagaaattctaagtaggctacccgtgaaattcctcttgcagttccgatgtgtttgcaagtcgtt 19727202  T
Q  266 gaattctctaatcactgatctcaaattcgccaa 298  Q
    ||||||||||||| |||||| ||||||||||||    
T  19727203 gaattctctaatctctgatcacaaattcgccaa 19727235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 320
Target Start/End: Complemental strand, 51222013 - 51221907
Alignment:
Q  217 ggctacccgtgaaactcctccttcaactccgatgcctttgcaaggcatggaattctctaatcac---tgatctcaaattcgccaagaagcaacttagcat 313  Q
    |||| |||||||||| |||| |||||||||| ||| | |||||| ||||||||||||| ||| |   |||| | || || ||||||||||||||| || |    
T  51222013 ggctgcccgtgaaacacctcattcaactccgctgcatctgcaagtcatggaattctcttatctctcatgatttaaattttgccaagaagcaacttcgctt 51221914  T
Q  314 gtcaacc 320  Q
    |||||||    
T  51221913 gtcaacc 51221907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 222 - 308
Target Start/End: Complemental strand, 51382257 - 51382168
Alignment:
Q  222 cccgtgaaactcctccttcaactccgatgcctttgcaaggcatggaattctctaatcac---tgatctcaaattcgccaagaagcaactt 308  Q
    |||||||||| ||||||||||||||| ||| | |||||| ||||||||| ||| ||| |   ||||  ||| ||||||||||||||||||    
T  51382257 cccgtgaaacacctccttcaactccgttgcgtctgcaagtcatggaattatcttatctctcatgattccaatttcgccaagaagcaactt 51382168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 274
Target Start/End: Complemental strand, 4183820 - 4183771
Alignment:
Q  225 gtgaaactcctccttcaactccgatgcctttgcaaggcatggaattctct 274  Q
    ||||||| ||||||||||||||| ||| |||||||| | |||||||||||    
T  4183820 gtgaaacacctccttcaactccgttgcgtttgcaagtcctggaattctct 4183771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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