View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19305_high_28 (Length: 373)
Name: NF19305_high_28
Description: NF19305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19305_high_28 |
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Alignment Details
Target: chr8 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 14 - 363
Target Start/End: Original strand, 49575 - 49919
Alignment:
| Q |
14 |
agttgatggttggtcgtctactacatgcaagcacaataaattaattaaatgaatcacaagtttgaatataatagctagtgtggcaatttatatagtttga |
113 |
Q |
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| T |
49575 |
agttgatggttggtcgtctactacatgcaagcacaataaattaattaaatgaatcacaagtttgaatataatagctagtgtggcaatttata--gtttga |
49672 |
T |
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| Q |
114 |
atcatcatatggtatacatgcaatgtagatacgaaattagaagatctcactaaccactgacgtttttctttttaatatcttcatgtttcacaccctgtaa |
213 |
Q |
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| T |
49673 |
atcatcatatggtatacatgcaatgtagatacgaaattagaagatctcactaaccactgacgtttttctttttaatatcttcatgtttcacaccctgtaa |
49772 |
T |
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| Q |
214 |
taatgacttataattaagtaagtaaaaccgacctaagataaggaaaaaatgtagtgtatgcgtgtgtgtaatgtaaacgagattaaacctgatttgttga |
313 |
Q |
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| T |
49773 |
t---gacttataattaagtaagtaaaaccgacctaagataaggaaaaaatgtagtgtatgcgtgtgtgtaatgtaaacgagattaaacctgatttgttga |
49869 |
T |
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| Q |
314 |
agcagtgagatgttgttgaggtggccttagttttgtcctctttttgtcct |
363 |
Q |
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| T |
49870 |
agcagtgagatgttgttgaggtggccttagttttgtcctctttttgtcct |
49919 |
T |
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