View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19305_high_36 (Length: 323)
Name: NF19305_high_36
Description: NF19305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19305_high_36 |
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Alignment Details
Target: chr3 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 18 - 308
Target Start/End: Complemental strand, 42837700 - 42837410
Alignment:
| Q |
18 |
ccattgacccctgtattccaccaaagcaagatctaatggttgccatgtattcgctatacattcgtgatattgtgtcttgctacaaatagcaaccctcata |
117 |
Q |
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| T |
42837700 |
ccattgacccctgtattccaccaaagcaagatctaatggttgccatgtattcgctatacattcgtgatattgtgtcttgctacaaatagcaaccctcata |
42837601 |
T |
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| Q |
118 |
cattaaaatacccaaagttggacacacgatttatggaatttgatagaatttaacatctccaaaatacttgaagggttaatcatggaagataaaatagcat |
217 |
Q |
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| T |
42837600 |
cattaaaatagccaaagttggacacacgatttatggaatttgatagaatttaccatctccaaaatacttgaagggttaatcatggaagataaaatagcat |
42837501 |
T |
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| Q |
218 |
ataaatcattccaaatataaataaagtatttcaacaaacagttcagtaaataatacatttatgctgctttatgcactttctttctggatat |
308 |
Q |
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| T |
42837500 |
ataaatcattccaaatataaataaagtatttcaacaaacagttcagtaaataatacatttatgctgctttatgcactttctttctggatat |
42837410 |
T |
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Target: chr1 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 29 - 99
Target Start/End: Original strand, 47022534 - 47022604
Alignment:
| Q |
29 |
tgtattccaccaaagcaagatctaatggttgccatgtattcgctatacattcgtgatattgtgtcttgcta |
99 |
Q |
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| T |
47022534 |
tgtattccaccaaaacaagatctaacggttgccatgtatttgctatatattcgtgatagtgtgtcttgcta |
47022604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 29 - 86
Target Start/End: Complemental strand, 41694705 - 41694648
Alignment:
| Q |
29 |
tgtattccaccaaagcaagatctaatggttgccatgtattcgctatacattcgtgata |
86 |
Q |
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|||||||||||||||||||||| |||||| |||||||||| |||| |||||| ||||| |
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| T |
41694705 |
tgtattccaccaaagcaagatcaaatggtggccatgtatttgctacacattcttgata |
41694648 |
T |
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