View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19305_high_43 (Length: 296)
Name: NF19305_high_43
Description: NF19305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19305_high_43 |
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Alignment Details
Target: chr2 (Bit Score: 236; Significance: 1e-130; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 21 - 283
Target Start/End: Complemental strand, 2815090 - 2814825
Alignment:
| Q |
21 |
aacacaagctaggaacatggtaagtatttatcaattccatatacttttaatgcatccaacttcaaagtggattttgacaaaagcatttggtgaatatgtt |
120 |
Q |
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| T |
2815090 |
aacacaagctaggaacatggtaagtatttatcaattccatatacttttaatgcatacaacttcaaagtggattttgacaaaaacatttggtgaatatgtt |
2814991 |
T |
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| Q |
121 |
taggtatccacttgttttgatgacagtgtac---aatgttatggatctaatagcatcatatattccgctcataacattcctgaagttggaatctagaaag |
217 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
2814990 |
taggtatccacttgttttgatgacagtgtacaataatgttatggatctaatagcatcatatattctgctcataacattcctgaagttggaatctagaaag |
2814891 |
T |
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| Q |
218 |
ggattattggttgctactctttctagattcttgttgatcccagcattttaatttgcagcaaaatat |
283 |
Q |
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| T |
2814890 |
ggattattggttgctactctttctagattcttgttgatcccagcattttactttgcagcaaaatat |
2814825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 22 - 264
Target Start/End: Complemental strand, 2820865 - 2820623
Alignment:
| Q |
22 |
acacaagctaggaacatggtaagtatttatcaattccatatacttttaatgcatccaacttc-aaagtggattttgacaaaagcatttggtgaatatgtt |
120 |
Q |
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| T |
2820865 |
acacaagctaggaacatggtaagtacttatcaattccatat-cttttgatgcatccaacttccaaaatggattttgacaaaaacatttggtgaatatgtt |
2820767 |
T |
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| Q |
121 |
taggtatccacttgttttgatgacagtgtacaatgttatggatctaatagcatcatatattccgctcataacattcctgaagttggaatctagaaaggga |
220 |
Q |
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| T |
2820766 |
taggtatccacttgttttgatgacagtgtacaatgttatggatctaatagcatcatatattctgctcatcaaattcctgaagttggaatccagaaagggc |
2820667 |
T |
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| Q |
221 |
ttattggttgctactctttctagattcttgttgatcccagcatt |
264 |
Q |
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| T |
2820666 |
ttattggttgccactctttctagattcttgttgatcccaacatt |
2820623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 283
Target Start/End: Original strand, 2835718 - 2835803
Alignment:
| Q |
198 |
tgaagttggaatctagaaagggattattggttgctactctttctagattcttgttgatcccagcattttaatttgcagcaaaatat |
283 |
Q |
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| T |
2835718 |
tgaagttggaatcaaggaagggtctaatgatagcaactctttctagattcttgttggttccagcattctactttactgcaaaatat |
2835803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 283
Target Start/End: Original strand, 2827755 - 2827863
Alignment:
| Q |
175 |
atatattccgctcataacattcctgaagttggaatctagaaagggattattggttgctactctttctagattcttgttgatcccagcattttaatttgca |
274 |
Q |
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| T |
2827755 |
atatattcccctcctcaaattcctgaagttggagtcaagaaagtgcttactcgctgcaattctttctagattactattgatccctgcattttacttcaca |
2827854 |
T |
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| Q |
275 |
gcaaaatat |
283 |
Q |
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||||||||| |
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| T |
2827855 |
gcaaaatat |
2827863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 167; Significance: 2e-89; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 21 - 283
Target Start/End: Original strand, 1428254 - 1428522
Alignment:
| Q |
21 |
aacacaagctaggaacatggtaagtatttatcaattccatatacttttaatgcatccaacttc-aaagtggattttgacaa------aagcatttggtga |
113 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||| |||| |||||| ||||||| ||| || |||||||||| || |||||||||| |
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| T |
1428254 |
aacacaagctaggaacatggtaagcatttatcaattccatata-ttttgatgcattcaacttccaaattgaattttgacaagaaattaaacatttggtga |
1428352 |
T |
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| Q |
114 |
atatgtttaggtatccacttgttttgatgacagtgtacaatgttatggatctaatagcatcatatattccgctcataacattcctgaagttggaatctag |
213 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| | |||| |||| ||||||||||| |
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| T |
1428353 |
atatgtttaggtatccacttgttttgatgacaatgtacaatgttatggatctaatagcatcatatattcccctcatcaaattcttgaaattggaatctag |
1428452 |
T |
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| Q |
214 |
aaagggattattggttgctactctttctagattcttgttgatcccagcattttaatttgcagcaaaatat |
283 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |
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| T |
1428453 |
aaagggtttattggttgctactctttctagattcttgttgatcccagcattttacttcacagcaaaatat |
1428522 |
T |
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