View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19305_high_45 (Length: 281)
Name: NF19305_high_45
Description: NF19305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19305_high_45 |
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Alignment Details
Target: chr6 (Bit Score: 80; Significance: 1e-37; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 30 - 140
Target Start/End: Original strand, 3022244 - 3022359
Alignment:
| Q |
30 |
gttgaagttatgagactccatcacaaactcatcaccccctcttgacatcg-----tgacctaaattttgaaggttgataaaaaataatgtagtggtcacc |
124 |
Q |
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| T |
3022244 |
gttgatgttatgagactccatcacaaactcatcaccccctcttgatatcaatcactgacctaaattttgaaggttgataaaaaataatgtagtggtcacc |
3022343 |
T |
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| Q |
125 |
aatgtttatcagatag |
140 |
Q |
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| T |
3022344 |
aatgtttatgagatag |
3022359 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 173 - 263
Target Start/End: Original strand, 3022392 - 3022483
Alignment:
| Q |
173 |
cgttcccatattaacacgctacaaaaatcgttcgaaaatttgcctctaaataa-ttgttcaaaattttatgctaactttaaaatgtttattg |
263 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| |
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| T |
3022392 |
cgttcccatattaacacgctacaacaatcgttcgaaaatttgcctctaaataatttgttcaaaattctatgctaactttaaaatgtttattg |
3022483 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 30 - 139
Target Start/End: Original strand, 3020575 - 3020690
Alignment:
| Q |
30 |
gttgaagttatgagactccatcacaaactcatcaccccctcttgacatc-----gtgacctaaattttgaaggttgat-aaaaaataatgtagtggtcac |
123 |
Q |
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| T |
3020575 |
gttgatgttatgagactccagcacaaattcatcaccccctattgacatctatcactgacctaaattttgcaggttgataaaaaaataatgtagtcgttac |
3020674 |
T |
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| Q |
124 |
caatgtttatcagata |
139 |
Q |
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| T |
3020675 |
caaagtttatgagata |
3020690 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 140
Target Start/End: Original strand, 3016484 - 3016525
Alignment:
| Q |
99 |
tgataaaaaataatgtagtggtcaccaatgtttatcagatag |
140 |
Q |
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| T |
3016484 |
tgataaaaaataatgtagttgtcaccaaagtttatcaaatag |
3016525 |
T |
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