View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19305_high_51 (Length: 255)
Name: NF19305_high_51
Description: NF19305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19305_high_51 |
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Alignment Details
Target: chr5 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 42215420 - 42215666
Alignment:
| Q |
1 |
ctaactggttcgataccaaaacaactatttgtgttgaggaatctaactcagcttatgcttatttccaatgatttggaaggattaataccacctgatatag |
100 |
Q |
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| T |
42215420 |
ctaactggttcgataccaaaacaactatttgtgttgaggaatctaactcagcttatgcttatttccaatgatttggaaggattaataccacctgatatag |
42215519 |
T |
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| Q |
101 |
gtaactgcacaagtctctacagattgaggttaaatcagaatagattggttggtaccattccatctgaaattgccaacttgaagaacttgaattttttgga |
200 |
Q |
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| T |
42215520 |
gtaactgcacaagtctctacagattgaggttaaatcagaatagattggttggtaccattccatctgaaattgccaacttgaagaacttgaattttttgga |
42215619 |
T |
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| Q |
201 |
cttgcactacaatcatcttgtaggggagattccatctcagttctctg |
247 |
Q |
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| T |
42215620 |
cttgcactacaatcatcttgtaggggagattccatctcagttctctg |
42215666 |
T |
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Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 34 - 112
Target Start/End: Original strand, 24156874 - 24156952
Alignment:
| Q |
34 |
ttgaggaatctaactcagcttatgcttatttccaatgatttggaaggattaataccacctgatataggtaactgcacaa |
112 |
Q |
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| T |
24156874 |
ttgaggaatctcacaaaacttttgcttatttccaatgatttgtcaggctttataccacctgatataggaaactgcacaa |
24156952 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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