View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19305_high_52 (Length: 253)
Name: NF19305_high_52
Description: NF19305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19305_high_52 |
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Alignment Details
Target: chr7 (Bit Score: 162; Significance: 1e-86; HSPs: 10)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 11 - 210
Target Start/End: Complemental strand, 8358102 - 8357907
Alignment:
| Q |
11 |
ttatacttgtaggcaagataatagctagtgacaatttcaatttgaaagaaaagaaagaagtcccacattggaaactttgtgaaatgtagagattgagtga |
110 |
Q |
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| T |
8358102 |
ttatacttgtaggcaagataatagctagtgacaatttcaatttgaaagaaaagaaagaagtcccacattggaaactttgtgaaatgtagagattgagtga |
8358003 |
T |
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| Q |
111 |
gctataaaaccaatgtattatgacttctttttagacattcattgcttcgctgttgagtttgataaatttatgtcctccattatactacttttccatcatc |
210 |
Q |
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| T |
8358002 |
gctataaaaccaatg---tatgacttcttttcagacattcattgcttcgctgttgag-ttgataaatttatgtactccagtttactacttttccatcatc |
8357907 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 11 - 189
Target Start/End: Complemental strand, 8353504 - 8353331
Alignment:
| Q |
11 |
ttatacttgtaggcaagataatagctagtgacaatttcaatttgaaagaaaagaaagaagtcccacattggaaactttgtgaaatgtagagattgagtga |
110 |
Q |
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| T |
8353504 |
ttatacttgtaggcaagataatagctagtgacaatttcaatttaaaagtaaagaaagaagtcccatatcaaaaactttgtgaaatatagagattgagtga |
8353405 |
T |
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| Q |
111 |
gctataaaaccaatgtattatgacttctttttagacattcattgcttcgctgttgagtttgataaatttatgtcctcca |
189 |
Q |
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| T |
8353404 |
gttat-aaaccaatg---tatgacttctttttagacattcattacttcgctgttgag-ttgatgaatttatgtcctcca |
8353331 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 11 - 128
Target Start/End: Complemental strand, 8359827 - 8359713
Alignment:
| Q |
11 |
ttatacttgtaggcaagataatagctagtgacaatttcaatttgaaagaaaagaaagaagtcccacattggaaactttgtgaaatgtagagattgagtga |
110 |
Q |
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| T |
8359827 |
ttatacatgaaggctagataatagctagtgacaatttcaatttgaaaggaaacaaagaagtccc---ttggaaactttgtgaaatgtagagattgagtga |
8359731 |
T |
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| Q |
111 |
gctataaaaccaatgtat |
128 |
Q |
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| T |
8359730 |
gctataaaaccaatgtat |
8359713 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 59 - 120
Target Start/End: Complemental strand, 8349765 - 8349704
Alignment:
| Q |
59 |
aaaagaaagaagtcccacattggaaactttgtgaaatgtagagattgagtgagctataaaac |
120 |
Q |
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| T |
8349765 |
aaaagaaagaagtcccacatcggaaactttgtgaaatgtagagagtgactgatctataaaac |
8349704 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 49 - 123
Target Start/End: Complemental strand, 8447619 - 8447544
Alignment:
| Q |
49 |
aatttgaaag-aaaagaaagaagtcccacattggaaactttgtgaaatgtagagattgagtgagctataaaaccaa |
123 |
Q |
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| T |
8447619 |
aatttgaaagcaaaagaaagaagtcccacatcggataatttgtgaaatgatgagagtgagtgagctataaaaccaa |
8447544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 48 - 122
Target Start/End: Complemental strand, 8408680 - 8408607
Alignment:
| Q |
48 |
caatttgaaagaaaagaaagaagtcccacattggaaactttgtgaaatgtagagattgagtgagctataaaacca |
122 |
Q |
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| T |
8408680 |
caatttgaaagcaa-gaaagaagtcccacatcggaaactttttgaaatgtacagagtgaatgagctataaaacca |
8408607 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 59 - 120
Target Start/End: Complemental strand, 8437113 - 8437052
Alignment:
| Q |
59 |
aaaagaaagaagtcccacattggaaactttgtgaaatgtagagattgagtgagctataaaac |
120 |
Q |
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| T |
8437113 |
aaaagaaagaagtcccacatcggaaacgttgtgaaatgatgagagtgagtgagctataaaac |
8437052 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 59 - 120
Target Start/End: Original strand, 8481356 - 8481417
Alignment:
| Q |
59 |
aaaagaaagaagtcccacattggaaactttgtgaaatgtagagattgagtgagctataaaac |
120 |
Q |
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| T |
8481356 |
aaaagaaagaagttccacatcggaaactttatgaaatgtagagagtgactgatctataaaac |
8481417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 51 - 120
Target Start/End: Original strand, 8428636 - 8428706
Alignment:
| Q |
51 |
tttgaaag-aaaagaaagaagtcccacattggaaactttgtgaaatgtagagattgagtgagctataaaac |
120 |
Q |
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| T |
8428636 |
tttgaaagcaaaagaaagacgtcccacatcgaaaactttgtgaaatattgagagtgactgagctataaaac |
8428706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 51 - 120
Target Start/End: Complemental strand, 8450801 - 8450731
Alignment:
| Q |
51 |
tttgaaag-aaaagaaagaagtcccacattggaaactttgtgaaatgtagagattgagtgagctataaaac |
120 |
Q |
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| T |
8450801 |
tttgaaagcaaaagaaagacgtcccacatcgaaaactttgtgaaatattgagagtgactgagctataaaac |
8450731 |
T |
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