View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19305_high_56 (Length: 242)
Name: NF19305_high_56
Description: NF19305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19305_high_56 |
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Alignment Details
Target: chr3 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 2189201 - 2188990
Alignment:
| Q |
1 |
ttgtagtgatttaggatattgttcacagtctgagcatcctaataagtgttttgcaaatcatcaaactatcatctacaaagaagagacgagtaattcttgt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
2189201 |
ttgtagtgatttaggatattgttcacagtctgagcatcctaataagtgttttgcaaatcattaaactatcatctacaaagaagagacgagtaattcttgt |
2189102 |
T |
|
| Q |
101 |
ggggctcctacagcaatttgaataccatggaggttacaattttcttgagatttccatatttatcctgaaattacttctgtatatatgataaacatgtaag |
200 |
Q |
| |
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|||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
2189101 |
ggggctcctacaacaatttgaataccatggaggttacaactttcttgagatttccatatttatcctaaaattacttctgtatatatgataaacatgtaat |
2189002 |
T |
|
| Q |
201 |
gagatagcgagt |
212 |
Q |
| |
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|||||||||||| |
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| T |
2189001 |
gagatagcgagt |
2188990 |
T |
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